miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 42615 0.66 1
Target:  5'- ---uGUUcAUGAAAAGUUGGACAaGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 49947 0.66 0.999999
Target:  5'- aGGAGUUUGCGGAucGUgcUGGGCguucGCGg -3'
miRNA:   3'- aUUUCAAAUGCUUuuCA--GCCUG----UGCa -5'
11673 5' -43.3 NC_003102.1 + 54289 0.72 0.998408
Target:  5'- ------aUGC-AAAAGUCGGACACGUu -3'
miRNA:   3'- auuucaaAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54624 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 55965 0.77 0.969274
Target:  5'- -----gUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 56055 0.85 0.716928
Target:  5'- ---uGUUUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 61334 0.66 1
Target:  5'- aAGAGUaUAUaguagacuuaaaGAAAAGUCaGACACGUu -3'
miRNA:   3'- aUUUCAaAUG------------CUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 61768 0.67 0.999999
Target:  5'- -uAAGUUugauucggucagacUACGAAaacguucaGAGaUCGGACACGUc -3'
miRNA:   3'- auUUCAA--------------AUGCUU--------UUC-AGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67144 0.78 0.944742
Target:  5'- --uAGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuUCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67237 0.71 0.999736
Target:  5'- -----aUUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67240 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67428 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76445 0.92 0.385142
Target:  5'- gUAAAGUUUAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76518 0.74 0.9948
Target:  5'- uUAAAaUUUACGAAAAGUCGGccagguucgauuugaACGCGUc -3'
miRNA:   3'- -AUUUcAAAUGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89316 0.67 0.999999
Target:  5'- ---uGUUUaaccACGAAAAGUCGGccggguuugauuugaACGCGUc -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89405 0.68 0.999986
Target:  5'- ---uGUUUaaaacAUGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAA-----UGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89422 0.68 0.999986
Target:  5'- ---uGUcUAUGAAAAGUCaGACAUGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89513 0.69 0.999974
Target:  5'- ---uGUUUGacaAAAAGUUGGACGCGUu -3'
miRNA:   3'- auuuCAAAUgc-UUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89606 1.07 0.065667
Target:  5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.