miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 103646 0.67 0.999997
Target:  5'- ---cGUUUgagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 103627 0.87 0.604609
Target:  5'- ---uGUUcACGAAAAGUCGGACGCGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103568 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103509 0.73 0.997191
Target:  5'- ---uGUccGCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103455 0.66 1
Target:  5'- --------uCGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97843 0.82 0.838862
Target:  5'- -cGGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97787 0.67 0.999999
Target:  5'- -cGGGUUugUACGAAAAGU-GGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAgCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97730 0.82 0.829701
Target:  5'- -cAGGUUugUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auUUCAA--AUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 97677 0.78 0.954016
Target:  5'- ---cGUUcACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89606 1.07 0.065667
Target:  5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89513 0.69 0.999974
Target:  5'- ---uGUUUGacaAAAAGUUGGACGCGUu -3'
miRNA:   3'- auuuCAAAUgc-UUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89422 0.68 0.999986
Target:  5'- ---uGUcUAUGAAAAGUCaGACAUGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89405 0.68 0.999986
Target:  5'- ---uGUUUaaaacAUGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAA-----UGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89316 0.67 0.999999
Target:  5'- ---uGUUUaaccACGAAAAGUCGGccggguuugauuugaACGCGUc -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76518 0.74 0.9948
Target:  5'- uUAAAaUUUACGAAAAGUCGGccagguucgauuugaACGCGUc -3'
miRNA:   3'- -AUUUcAAAUGCUUUUCAGCC---------------UGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 76445 0.92 0.385142
Target:  5'- gUAAAGUUUAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67428 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67240 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67237 0.71 0.999736
Target:  5'- -----aUUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGCCuGUgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.