Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11673 | 5' | -43.3 | NC_003102.1 | + | 137401 | 0.72 | 0.998408 |
Target: 5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3' miRNA: 3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 137325 | 0.72 | 0.998408 |
Target: 5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3' miRNA: 3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 137286 | 0.72 | 0.998408 |
Target: 5'- ---uGUccACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 137209 | 0.72 | 0.998408 |
Target: 5'- ---uGUccACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 137132 | 0.72 | 0.998408 |
Target: 5'- ---uGUccACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 137033 | 0.69 | 0.999974 |
Target: 5'- -------cACGAAAAGUUGGcCACGUu -3' miRNA: 3'- auuucaaaUGCUUUUCAGCCuGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 132237 | 0.72 | 0.998408 |
Target: 5'- -cAAGUUUAUGAacauguuuuuaaAAAGUCGGcCGCGUu -3' miRNA: 3'- auUUCAAAUGCU------------UUUCAGCCuGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 121923 | 0.7 | 0.999881 |
Target: 5'- ---cGUUUAUGAAAAGUCaaACACGUu -3' miRNA: 3'- auuuCAAAUGCUUUUCAGccUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 121840 | 0.75 | 0.991234 |
Target: 5'- ------cUACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuucaaAUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 121720 | 0.75 | 0.989882 |
Target: 5'- uUAAAGUgguuuaagUACGAAAAGUCGGcCAgGUu -3' miRNA: 3'- -AUUUCAa-------AUGCUUUUCAGCCuGUgCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 118014 | 0.73 | 0.997191 |
Target: 5'- gAAAGUggAC---AAGUCGGACACGa -3' miRNA: 3'- aUUUCAaaUGcuuUUCAGCCUGUGCa -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 112932 | 0.82 | 0.847794 |
Target: 5'- cAAAGUUUACGAAAAGUUGGcCAgGUu -3' miRNA: 3'- aUUUCAAAUGCUUUUCAGCCuGUgCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 112815 | 0.67 | 0.999997 |
Target: 5'- ---uGUUcACGAAAAGUCaGACAgGUu -3' miRNA: 3'- auuuCAAaUGCUUUUCAGcCUGUgCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 112731 | 0.66 | 1 |
Target: 5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 112539 | 0.73 | 0.997191 |
Target: 5'- ---cGUccACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 112438 | 0.73 | 0.998065 |
Target: 5'- ---cGUUUcguaACuAAAAGUCGGACACGUu -3' miRNA: 3'- auuuCAAA----UGcUUUUCAGCCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 104678 | 0.66 | 1 |
Target: 5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 104602 | 0.92 | 0.376017 |
Target: 5'- aUAAAGUUUAUGAAAAGUCGGcCACGUu -3' miRNA: 3'- -AUUUCAAAUGCUUUUCAGCCuGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 104490 | 0.71 | 0.999569 |
Target: 5'- -------cACGAAAAGUCuGACACGUu -3' miRNA: 3'- auuucaaaUGCUUUUCAGcCUGUGCA- -5' |
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11673 | 5' | -43.3 | NC_003102.1 | + | 104320 | 0.73 | 0.997191 |
Target: 5'- ---cGUccACGAAAAGUCaGACACGUu -3' miRNA: 3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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