miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 10404 0.69 0.999981
Target:  5'- -uAAGUUggccucACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auUUCAAa-----UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10477 0.69 0.999964
Target:  5'- uUAAAGUggcuuaaacACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10561 0.69 0.999974
Target:  5'- aAAAGUgauucagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- aUUUCAaa------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10642 0.69 0.999964
Target:  5'- uUAAAGUgacuuaagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10680 0.77 0.975366
Target:  5'- ---uGUcUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 10759 0.75 0.991234
Target:  5'- ------cUACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuucaaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 20801 0.7 0.999831
Target:  5'- aAAAGUUUuaaucgcgacuacgACGAcgacGAGUUGGACGCGa -3'
miRNA:   3'- aUUUCAAA--------------UGCUu---UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 25998 0.86 0.638531
Target:  5'- ---uGUUUACGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26016 0.69 0.999964
Target:  5'- uUAAAGUggcuuaagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26093 0.69 0.999964
Target:  5'- uUAAAGUggcuuaaacACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26297 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26356 0.76 0.984832
Target:  5'- ---uGUUaACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26520 0.68 0.999993
Target:  5'- --------uCGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26741 0.73 0.997191
Target:  5'- ---cGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26924 0.66 1
Target:  5'- ---uGUUUACGAAAAGUC--AUACGg -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 31243 0.69 0.999981
Target:  5'- ------cUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- auuucaaAUGCUU------UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 36062 0.7 0.999881
Target:  5'- gUAAAuGUacAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUU-CAaaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36181 0.83 0.780818
Target:  5'- ---uGUUUGCuAAAAGUCGGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36264 0.69 0.99995
Target:  5'- uUAAAGUUUAUaAAAAGUCaGACAgGUu -3'
miRNA:   3'- -AUUUCAAAUGcUUUUCAGcCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 42422 0.69 0.99995
Target:  5'- --cGGUagcgUACGAAAAGUUGGugACu- -3'
miRNA:   3'- auuUCAa---AUGCUUUUCAGCCugUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.