miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 104678 0.66 1
Target:  5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67428 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137325 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89606 1.07 0.065667
Target:  5'- gUAAAGUUUACGAAAAGUCGGACACGUu -3'
miRNA:   3'- -AUUUCAAAUGCUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 61768 0.67 0.999999
Target:  5'- -uAAGUUugauucggucagacUACGAAaacguucaGAGaUCGGACACGUc -3'
miRNA:   3'- auUUCAA--------------AUGCUU--------UUC-AGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 103646 0.67 0.999997
Target:  5'- ---cGUUUgagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAAA----UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26520 0.68 0.999993
Target:  5'- --------uCGAAAAGUCGGcCACGUu -3'
miRNA:   3'- auuucaaauGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89422 0.68 0.999986
Target:  5'- ---uGUcUAUGAAAAGUCaGACAUGUu -3'
miRNA:   3'- auuuCAaAUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36264 0.69 0.99995
Target:  5'- uUAAAGUUUAUaAAAAGUCaGACAgGUu -3'
miRNA:   3'- -AUUUCAAAUGcUUUUCAGcCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 121923 0.7 0.999881
Target:  5'- ---cGUUUAUGAAAAGUCaaACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 89513 0.69 0.999974
Target:  5'- ---uGUUUGacaAAAAGUUGGACGCGUu -3'
miRNA:   3'- auuuCAAAUgc-UUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 112731 0.66 1
Target:  5'- ---uGUcaACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67240 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 42615 0.66 1
Target:  5'- ---uGUUcAUGAAAAGUUGGACAaGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGCCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 31243 0.69 0.999981
Target:  5'- ------cUACGAGagcgucGAGUUGGACACGa -3'
miRNA:   3'- auuucaaAUGCUU------UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 20801 0.7 0.999831
Target:  5'- aAAAGUUUuaaucgcgacuacgACGAcgacGAGUUGGACGCGa -3'
miRNA:   3'- aUUUCAAA--------------UGCUu---UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 132237 0.72 0.998408
Target:  5'- -cAAGUUUAUGAacauguuuuuaaAAAGUCGGcCGCGUu -3'
miRNA:   3'- auUUCAAAUGCU------------UUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 26924 0.66 1
Target:  5'- ---uGUUUACGAAAAGUC--AUACGg -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 112815 0.67 0.999997
Target:  5'- ---uGUUcACGAAAAGUCaGACAgGUu -3'
miRNA:   3'- auuuCAAaUGCUUUUCAGcCUGUgCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.