miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11673 5' -43.3 NC_003102.1 + 26093 0.69 0.999964
Target:  5'- uUAAAGUggcuuaaacACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 26016 0.69 0.999964
Target:  5'- uUAAAGUggcuuaagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10477 0.69 0.999964
Target:  5'- uUAAAGUggcuuaaacACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 10642 0.69 0.999964
Target:  5'- uUAAAGUgacuuaagcACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- -AUUUCAaa-------UGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 42422 0.69 0.99995
Target:  5'- --cGGUagcgUACGAAAAGUUGGugACu- -3'
miRNA:   3'- auuUCAa---AUGCUUUUCAGCCugUGca -5'
11673 5' -43.3 NC_003102.1 + 36264 0.69 0.99995
Target:  5'- uUAAAGUUUAUaAAAAGUCaGACAgGUu -3'
miRNA:   3'- -AUUUCAAAUGcUUUUCAGcCUGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 121923 0.7 0.999881
Target:  5'- ---cGUUUAUGAAAAGUCaaACACGUu -3'
miRNA:   3'- auuuCAAAUGCUUUUCAGccUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 36062 0.7 0.999881
Target:  5'- gUAAAuGUacAUGAAAAGUCGGcCACGUu -3'
miRNA:   3'- -AUUU-CAaaUGCUUUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 20801 0.7 0.999831
Target:  5'- aAAAGUUUuaaucgcgacuacgACGAcgacGAGUUGGACGCGa -3'
miRNA:   3'- aUUUCAAA--------------UGCUu---UUCAGCCUGUGCa -5'
11673 5' -43.3 NC_003102.1 + 67237 0.71 0.999736
Target:  5'- -----aUUACGAAAAGUCGGcCAgGUu -3'
miRNA:   3'- auuucaAAUGCUUUUCAGCCuGUgCA- -5'
11673 5' -43.3 NC_003102.1 + 67428 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67240 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 104490 0.71 0.999569
Target:  5'- -------cACGAAAAGUCuGACACGUu -3'
miRNA:   3'- auuucaaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 67338 0.71 0.999569
Target:  5'- ---uGUUUGCaAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAAAUGcUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 54289 0.72 0.998408
Target:  5'- ------aUGC-AAAAGUCGGACACGUu -3'
miRNA:   3'- auuucaaAUGcUUUUCAGCCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137286 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 132237 0.72 0.998408
Target:  5'- -cAAGUUUAUGAacauguuuuuaaAAAGUCGGcCGCGUu -3'
miRNA:   3'- auUUCAAAUGCU------------UUUCAGCCuGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137132 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137209 0.72 0.998408
Target:  5'- ---uGUccACGAAAAGUCaGACACGUu -3'
miRNA:   3'- auuuCAaaUGCUUUUCAGcCUGUGCA- -5'
11673 5' -43.3 NC_003102.1 + 137325 0.72 0.998408
Target:  5'- ---cGgcUAUGAAAAGUCGGcCGCGUu -3'
miRNA:   3'- auuuCaaAUGCUUUUCAGCCuGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.