Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 117896 | 0.7 | 0.871949 |
|
Target: 5'- -gGAGGCGUCcagUCGACcgacgaGGCcAUCGAUgCCg -3' miRNA: 3'- uaCUUCGCAG---AGCUG------CCG-UAGCUA-GG- -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 131643 | 0.69 | 0.88651 |
|
Target: 5'- -cGAGGCGUgUgCGACuGUggCGAUCCg -3' miRNA: 3'- uaCUUCGCAgA-GCUGcCGuaGCUAGG- -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 134368 | 0.67 | 0.961016 |
|
Target: 5'- uGUGuAGCGgcggCGGCGGCGgcggCGGUCg -3' miRNA: 3'- -UACuUCGCaga-GCUGCCGUa---GCUAGg -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 135518 | 0.67 | 0.952919 |
|
Target: 5'- -gGAaucGGCGUCgggguuuuugCGAUGGCGUCGuugcgcuAUCCu -3' miRNA: 3'- uaCU---UCGCAGa---------GCUGCCGUAGC-------UAGG- -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 137007 | 0.67 | 0.949127 |
|
Target: 5'- uUGggGCGccgCUgGugGGCcgaaaacaugAUCGAUUCg -3' miRNA: 3'- uACuuCGCa--GAgCugCCG----------UAGCUAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home