miRNA display CGI


Results 21 - 25 of 25 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11675 3' -52.7 NC_003102.1 + 40331 0.66 0.96778
Target:  5'- -cGAAcGCGccgUUCGGCGGCAUCaugguGAUCg -3'
miRNA:   3'- uaCUU-CGCa--GAGCUGCCGUAG-----CUAGg -5'
11675 3' -52.7 NC_003102.1 + 37392 0.68 0.927704
Target:  5'- uUGAAGCGUCUUGgacauuaGCGcagaaacaugaucaGCGUCGAcgaUCCg -3'
miRNA:   3'- uACUUCGCAGAGC-------UGC--------------CGUAGCU---AGG- -5'
11675 3' -52.7 NC_003102.1 + 35751 0.67 0.94468
Target:  5'- gAUGAcaguucucgcGGCGauaUCUCGuCGGCuUCGAUCa -3'
miRNA:   3'- -UACU----------UCGC---AGAGCuGCCGuAGCUAGg -5'
11675 3' -52.7 NC_003102.1 + 31698 0.67 0.94468
Target:  5'- ----cGCGUCUCGACacGCG-CGAUCUg -3'
miRNA:   3'- uacuuCGCAGAGCUGc-CGUaGCUAGG- -5'
11675 3' -52.7 NC_003102.1 + 18469 0.66 0.973667
Target:  5'- -cGAcGGCGgcaggUUCGuCGGCGUCGG-CCa -3'
miRNA:   3'- uaCU-UCGCa----GAGCuGCCGUAGCUaGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.