miRNA: 3'- uaCUUCG------CAGagCUGCCGUAGC-UAGG- -5'
miRNA: 3'- uaCUU-CGCa--GAGCUGCCGUAG-----CUAGg -5'
miRNA: 3'- uacuuC-GCAGaGCUGCCGuAGCUAGg -5'
miRNA: 3'- uaCUuCGCAGa----GCUGCCG------UAGCU-AGG- -5'
miRNA: 3'- uaCUuCGC--------AGAGCUGCCGUa--GCUAGG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 88892 | 0.66 | 0.964511 |
|
Target: 5'- -aGAAGCcgccgaGUCg-GACGGUGUCGuGUCCg -3' miRNA: 3'- uaCUUCG------CAGagCUGCCGUAGC-UAGG- -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 40331 | 0.66 | 0.96778 |
|
Target: 5'- -cGAAcGCGccgUUCGGCGGCAUCaugguGAUCg -3' miRNA: 3'- uaCUU-CGCa--GAGCUGCCGUAG-----CUAGg -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 49546 | 0.66 | 0.97083 |
|
Target: 5'- ----cGcCGUCgCGACGGCuUCGAUCg -3' miRNA: 3'- uacuuC-GCAGaGCUGCCGuAGCUAGg -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 81380 | 0.66 | 0.978731 |
|
Target: 5'- -cGAcGCGUCgucugCGACGGCgaccgcGUCGAcUUCg -3' miRNA: 3'- uaCUuCGCAGa----GCUGCCG------UAGCU-AGG- -5' |
|||||||
| 11675 | 3' | -52.7 | NC_003102.1 | + | 63066 | 0.74 | 0.686992 |
|
Target: 5'- -cGAcGCGagacacgaUCUCGGCGGCGgcaCGGUCCa -3' miRNA: 3'- uaCUuCGC--------AGAGCUGCCGUa--GCUAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home