miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11676 5' -51.5 NC_003102.1 + 102446 1.14 0.003676
Target:  5'- uUCAUCGAGACAAAGACGGCGCUGACCa -3'
miRNA:   3'- -AGUAGCUCUGUUUCUGCCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 80288 0.77 0.562082
Target:  5'- -gGUCGAGAaucaCAucGGCGGCGCUGuuuCCa -3'
miRNA:   3'- agUAGCUCU----GUuuCUGCCGCGACu--GG- -5'
11676 5' -51.5 NC_003102.1 + 64895 0.76 0.614358
Target:  5'- aCGUCG-GAC-AAGGCGGUGCUGcgGCCc -3'
miRNA:   3'- aGUAGCuCUGuUUCUGCCGCGAC--UGG- -5'
11676 5' -51.5 NC_003102.1 + 53101 0.73 0.815399
Target:  5'- -aAUCGAGugAAGGugGGCGgaGGa- -3'
miRNA:   3'- agUAGCUCugUUUCugCCGCgaCUgg -5'
11676 5' -51.5 NC_003102.1 + 130959 0.72 0.849626
Target:  5'- -gAUCGcauAGGCAAcauGuCGGCGUUGACCa -3'
miRNA:   3'- agUAGC---UCUGUUu--CuGCCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 102048 0.71 0.88767
Target:  5'- gUCAUCGAauCGAAGcgGCGGCGgUGGCg -3'
miRNA:   3'- -AGUAGCUcuGUUUC--UGCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 100745 0.7 0.900597
Target:  5'- uUCGUCgGAGACGGAGuuuuUGGCGCUacgggagGACg -3'
miRNA:   3'- -AGUAG-CUCUGUUUCu---GCCGCGA-------CUGg -5'
11676 5' -51.5 NC_003102.1 + 95160 0.7 0.911411
Target:  5'- gCAUCGuguacggauuguuGGCAAuguuguGGuaaACGGCGCUGACCc -3'
miRNA:   3'- aGUAGCu------------CUGUU------UC---UGCCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 21636 0.7 0.919773
Target:  5'- aCGUucCGAGAaaaauCAGAGACGGCGCcGugUu -3'
miRNA:   3'- aGUA--GCUCU-----GUUUCUGCCGCGaCugG- -5'
11676 5' -51.5 NC_003102.1 + 11981 0.7 0.919773
Target:  5'- -aGUCGGGACGAAugaauauguacGAUGGCGCgucaaACCg -3'
miRNA:   3'- agUAGCUCUGUUU-----------CUGCCGCGac---UGG- -5'
11676 5' -51.5 NC_003102.1 + 20537 0.69 0.93086
Target:  5'- cCAUCaAGACGGuGACGGCuaUGGCg -3'
miRNA:   3'- aGUAGcUCUGUUuCUGCCGcgACUGg -5'
11676 5' -51.5 NC_003102.1 + 111603 0.69 0.936023
Target:  5'- aUCGUCgGAGACAaaagcggagGAGGCGGCgGCggcGGCg -3'
miRNA:   3'- -AGUAG-CUCUGU---------UUCUGCCG-CGa--CUGg -5'
11676 5' -51.5 NC_003102.1 + 131471 0.69 0.940935
Target:  5'- cCAUUGGGACGAGacGAUGGCGgacgGAUCg -3'
miRNA:   3'- aGUAGCUCUGUUU--CUGCCGCga--CUGG- -5'
11676 5' -51.5 NC_003102.1 + 102716 0.69 0.940935
Target:  5'- aCGUCGAcaauGACGAcGGCGGUGCcGAUg -3'
miRNA:   3'- aGUAGCU----CUGUUuCUGCCGCGaCUGg -5'
11676 5' -51.5 NC_003102.1 + 52978 0.69 0.940935
Target:  5'- aUUGUUGAGACccuuGAUGGCGCgGuCCg -3'
miRNA:   3'- -AGUAGCUCUGuuu-CUGCCGCGaCuGG- -5'
11676 5' -51.5 NC_003102.1 + 24307 0.69 0.945595
Target:  5'- aUCGcCGAGACGGcaGCGGCcaUGACCa -3'
miRNA:   3'- -AGUaGCUCUGUUucUGCCGcgACUGG- -5'
11676 5' -51.5 NC_003102.1 + 41576 0.68 0.954175
Target:  5'- aCGUUGAcGGCGAAacguauuCGGCGCUGAUg -3'
miRNA:   3'- aGUAGCU-CUGUUUcu-----GCCGCGACUGg -5'
11676 5' -51.5 NC_003102.1 + 4403 0.68 0.954175
Target:  5'- uUCAUCGGGuuc--GACGGgcUGCUGAUCa -3'
miRNA:   3'- -AGUAGCUCuguuuCUGCC--GCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 79913 0.68 0.958101
Target:  5'- aCGUUG-GACGGcacGAUGGCGUcGACCa -3'
miRNA:   3'- aGUAGCuCUGUUu--CUGCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 34307 0.68 0.958101
Target:  5'- uUCAaCGAGuuu-AGACGGCGCgucGACa -3'
miRNA:   3'- -AGUaGCUCuguuUCUGCCGCGa--CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.