miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11676 5' -51.5 NC_003102.1 + 4403 0.68 0.954175
Target:  5'- uUCAUCGGGuuc--GACGGgcUGCUGAUCa -3'
miRNA:   3'- -AGUAGCUCuguuuCUGCC--GCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 11981 0.7 0.919773
Target:  5'- -aGUCGGGACGAAugaauauguacGAUGGCGCgucaaACCg -3'
miRNA:   3'- agUAGCUCUGUUU-----------CUGCCGCGac---UGG- -5'
11676 5' -51.5 NC_003102.1 + 18384 0.66 0.991237
Target:  5'- uUCAUCGAGcAUGAucuuGGCGGuCGCguuCCa -3'
miRNA:   3'- -AGUAGCUC-UGUUu---CUGCC-GCGacuGG- -5'
11676 5' -51.5 NC_003102.1 + 20537 0.69 0.93086
Target:  5'- cCAUCaAGACGGuGACGGCuaUGGCg -3'
miRNA:   3'- aGUAGcUCUGUUuCUGCCGcgACUGg -5'
11676 5' -51.5 NC_003102.1 + 20876 0.66 0.989983
Target:  5'- ---cCGAGuCGAcuugGGGCGGCGgUGGCa -3'
miRNA:   3'- aguaGCUCuGUU----UCUGCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 21636 0.7 0.919773
Target:  5'- aCGUucCGAGAaaaauCAGAGACGGCGCcGugUu -3'
miRNA:   3'- aGUA--GCUCU-----GUUUCUGCCGCGaCugG- -5'
11676 5' -51.5 NC_003102.1 + 23309 0.68 0.96179
Target:  5'- aUCAUCGAGucGCAggucGAGACGG-GCacGCCg -3'
miRNA:   3'- -AGUAGCUC--UGU----UUCUGCCgCGacUGG- -5'
11676 5' -51.5 NC_003102.1 + 24307 0.69 0.945595
Target:  5'- aUCGcCGAGACGGcaGCGGCcaUGACCa -3'
miRNA:   3'- -AGUaGCUCUGUUucUGCCGcgACUGG- -5'
11676 5' -51.5 NC_003102.1 + 34307 0.68 0.958101
Target:  5'- uUCAaCGAGuuu-AGACGGCGCgucGACa -3'
miRNA:   3'- -AGUaGCUCuguuUCUGCCGCGa--CUGg -5'
11676 5' -51.5 NC_003102.1 + 41576 0.68 0.954175
Target:  5'- aCGUUGAcGGCGAAacguauuCGGCGCUGAUg -3'
miRNA:   3'- aGUAGCU-CUGUUUcu-----GCCGCGACUGg -5'
11676 5' -51.5 NC_003102.1 + 42379 0.66 0.986063
Target:  5'- -uGUCGAGAUcagcuggaacgugugGAAcGGCGGCGgaGGCg -3'
miRNA:   3'- agUAGCUCUG---------------UUU-CUGCCGCgaCUGg -5'
11676 5' -51.5 NC_003102.1 + 52978 0.69 0.940935
Target:  5'- aUUGUUGAGACccuuGAUGGCGCgGuCCg -3'
miRNA:   3'- -AGUAGCUCUGuuu-CUGCCGCGaCuGG- -5'
11676 5' -51.5 NC_003102.1 + 53101 0.73 0.815399
Target:  5'- -aAUCGAGugAAGGugGGCGgaGGa- -3'
miRNA:   3'- agUAGCUCugUUUCugCCGCgaCUgg -5'
11676 5' -51.5 NC_003102.1 + 64895 0.76 0.614358
Target:  5'- aCGUCG-GAC-AAGGCGGUGCUGcgGCCc -3'
miRNA:   3'- aGUAGCuCUGuUUCUGCCGCGAC--UGG- -5'
11676 5' -51.5 NC_003102.1 + 65250 0.66 0.989983
Target:  5'- aCAUCGGGcCGaagcggagGAGGCGGCGauaGACa -3'
miRNA:   3'- aGUAGCUCuGU--------UUCUGCCGCga-CUGg -5'
11676 5' -51.5 NC_003102.1 + 74014 0.66 0.987058
Target:  5'- aUCcUCGAGAUucGGGGCcgagGGUGCUG-CCg -3'
miRNA:   3'- -AGuAGCUCUGu-UUCUG----CCGCGACuGG- -5'
11676 5' -51.5 NC_003102.1 + 75862 0.66 0.989983
Target:  5'- gUCGUCGu--CGGuGACGGCGCc-GCCg -3'
miRNA:   3'- -AGUAGCucuGUUuCUGCCGCGacUGG- -5'
11676 5' -51.5 NC_003102.1 + 79913 0.68 0.958101
Target:  5'- aCGUUG-GACGGcacGAUGGCGUcGACCa -3'
miRNA:   3'- aGUAGCuCUGUUu--CUGCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 80288 0.77 0.562082
Target:  5'- -gGUCGAGAaucaCAucGGCGGCGCUGuuuCCa -3'
miRNA:   3'- agUAGCUCU----GUuuCUGCCGCGACu--GG- -5'
11676 5' -51.5 NC_003102.1 + 87435 0.66 0.985367
Target:  5'- -gAUCGAucGACGucggcGACGGCGgUGGCa -3'
miRNA:   3'- agUAGCU--CUGUuu---CUGCCGCgACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.