Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11676 | 5' | -51.5 | NC_003102.1 | + | 91359 | 0.66 | 0.989983 |
Target: 5'- -gAUCGAGACGAuucugagcGGCGGcCGCgu-CCg -3' miRNA: 3'- agUAGCUCUGUUu-------CUGCC-GCGacuGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 93595 | 0.67 | 0.976885 |
Target: 5'- gCGUUGGGAUuuuugcGCGGCGCUcucgccucGACCg -3' miRNA: 3'- aGUAGCUCUGuuuc--UGCCGCGA--------CUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 94833 | 0.66 | 0.989581 |
Target: 5'- ---aCGAGACGgacGGGAUGGCGUUucuaauagucuagcGGCCc -3' miRNA: 3'- aguaGCUCUGU---UUCUGCCGCGA--------------CUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 95160 | 0.7 | 0.911411 |
Target: 5'- gCAUCGuguacggauuguuGGCAAuguuguGGuaaACGGCGCUGACCc -3' miRNA: 3'- aGUAGCu------------CUGUU------UC---UGCCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 100745 | 0.7 | 0.900597 |
Target: 5'- uUCGUCgGAGACGGAGuuuuUGGCGCUacgggagGACg -3' miRNA: 3'- -AGUAG-CUCUGUUUCu---GCCGCGA-------CUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 101720 | 0.68 | 0.965248 |
Target: 5'- aCAUCGAuacggaaacGACAuAGACguGGUcaacaaGCUGACCg -3' miRNA: 3'- aGUAGCU---------CUGUuUCUG--CCG------CGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 102048 | 0.71 | 0.88767 |
Target: 5'- gUCAUCGAauCGAAGcgGCGGCGgUGGCg -3' miRNA: 3'- -AGUAGCUcuGUUUC--UGCCGCgACUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 102446 | 1.14 | 0.003676 |
Target: 5'- uUCAUCGAGACAAAGACGGCGCUGACCa -3' miRNA: 3'- -AGUAGCUCUGUUUCUGCCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 102716 | 0.69 | 0.940935 |
Target: 5'- aCGUCGAcaauGACGAcGGCGGUGCcGAUg -3' miRNA: 3'- aGUAGCU----CUGUUuCUGCCGCGaCUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 107517 | 0.67 | 0.974291 |
Target: 5'- gUCAagGuuGCGcAGACGGUGCUGAa- -3' miRNA: 3'- -AGUagCucUGUuUCUGCCGCGACUgg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 111603 | 0.69 | 0.936023 |
Target: 5'- aUCGUCgGAGACAaaagcggagGAGGCGGCgGCggcGGCg -3' miRNA: 3'- -AGUAG-CUCUGU---------UUCUGCCG-CGa--CUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 112998 | 0.67 | 0.979281 |
Target: 5'- gUCGUCGuGGCGGugguGGuguCGGCGgUGGCg -3' miRNA: 3'- -AGUAGCuCUGUU----UCu--GCCGCgACUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 120944 | 0.68 | 0.964234 |
Target: 5'- -gGUCGAcuugaauguaacccGGCGGAcACGGCGC-GACCg -3' miRNA: 3'- agUAGCU--------------CUGUUUcUGCCGCGaCUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 121417 | 0.67 | 0.974291 |
Target: 5'- aCAgggCGAGAagaugcaauccCAAuacGGGCguguGGCGCUGACCc -3' miRNA: 3'- aGUa--GCUCU-----------GUU---UCUG----CCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 126184 | 0.67 | 0.976634 |
Target: 5'- gCGUCuuGAUAGAaacucacgaaaauGGCGGCGC-GACCg -3' miRNA: 3'- aGUAGcuCUGUUU-------------CUGCCGCGaCUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 130959 | 0.72 | 0.849626 |
Target: 5'- -gAUCGcauAGGCAAcauGuCGGCGUUGACCa -3' miRNA: 3'- agUAGC---UCUGUUu--CuGCCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 131471 | 0.69 | 0.940935 |
Target: 5'- cCAUUGGGACGAGacGAUGGCGgacgGAUCg -3' miRNA: 3'- aGUAGCUCUGUUU--CUGCCGCga--CUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 134793 | 0.66 | 0.989581 |
Target: 5'- -uGUUGAG-CGgcGACGGUucgcaaucgugcgaGCUGGCCa -3' miRNA: 3'- agUAGCUCuGUuuCUGCCG--------------CGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 135082 | 0.67 | 0.971491 |
Target: 5'- -gAUUGgagaGGGCGAcGACGGCGgUGGCUg -3' miRNA: 3'- agUAGC----UCUGUUuCUGCCGCgACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 136440 | 0.68 | 0.968479 |
Target: 5'- cCAUCGucAGACAGaAGAuUGGCGC-GAUCg -3' miRNA: 3'- aGUAGC--UCUGUU-UCU-GCCGCGaCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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