miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11676 5' -51.5 NC_003102.1 + 11981 0.7 0.919773
Target:  5'- -aGUCGGGACGAAugaauauguacGAUGGCGCgucaaACCg -3'
miRNA:   3'- agUAGCUCUGUUU-----------CUGCCGCGac---UGG- -5'
11676 5' -51.5 NC_003102.1 + 21636 0.7 0.919773
Target:  5'- aCGUucCGAGAaaaauCAGAGACGGCGCcGugUu -3'
miRNA:   3'- aGUA--GCUCU-----GUUUCUGCCGCGaCugG- -5'
11676 5' -51.5 NC_003102.1 + 102048 0.71 0.88767
Target:  5'- gUCAUCGAauCGAAGcgGCGGCGgUGGCg -3'
miRNA:   3'- -AGUAGCUcuGUUUC--UGCCGCgACUGg -5'
11676 5' -51.5 NC_003102.1 + 130959 0.72 0.849626
Target:  5'- -gAUCGcauAGGCAAcauGuCGGCGUUGACCa -3'
miRNA:   3'- agUAGC---UCUGUUu--CuGCCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 53101 0.73 0.815399
Target:  5'- -aAUCGAGugAAGGugGGCGgaGGa- -3'
miRNA:   3'- agUAGCUCugUUUCugCCGCgaCUgg -5'
11676 5' -51.5 NC_003102.1 + 64895 0.76 0.614358
Target:  5'- aCGUCG-GAC-AAGGCGGUGCUGcgGCCc -3'
miRNA:   3'- aGUAGCuCUGuUUCUGCCGCGAC--UGG- -5'
11676 5' -51.5 NC_003102.1 + 80288 0.77 0.562082
Target:  5'- -gGUCGAGAaucaCAucGGCGGCGCUGuuuCCa -3'
miRNA:   3'- agUAGCUCU----GUuuCUGCCGCGACu--GG- -5'
11676 5' -51.5 NC_003102.1 + 41576 0.68 0.954175
Target:  5'- aCGUUGAcGGCGAAacguauuCGGCGCUGAUg -3'
miRNA:   3'- aGUAGCU-CUGUUUcu-----GCCGCGACUGg -5'
11676 5' -51.5 NC_003102.1 + 23309 0.68 0.96179
Target:  5'- aUCAUCGAGucGCAggucGAGACGG-GCacGCCg -3'
miRNA:   3'- -AGUAGCUC--UGU----UUCUGCCgCGacUGG- -5'
11676 5' -51.5 NC_003102.1 + 18384 0.66 0.991237
Target:  5'- uUCAUCGAGcAUGAucuuGGCGGuCGCguuCCa -3'
miRNA:   3'- -AGUAGCUC-UGUUu---CUGCC-GCGacuGG- -5'
11676 5' -51.5 NC_003102.1 + 75862 0.66 0.989983
Target:  5'- gUCGUCGu--CGGuGACGGCGCc-GCCg -3'
miRNA:   3'- -AGUAGCucuGUUuCUGCCGCGacUGG- -5'
11676 5' -51.5 NC_003102.1 + 91359 0.66 0.989983
Target:  5'- -gAUCGAGACGAuucugagcGGCGGcCGCgu-CCg -3'
miRNA:   3'- agUAGCUCUGUUu-------CUGCC-GCGacuGG- -5'
11676 5' -51.5 NC_003102.1 + 94833 0.66 0.989581
Target:  5'- ---aCGAGACGgacGGGAUGGCGUUucuaauagucuagcGGCCc -3'
miRNA:   3'- aguaGCUCUGU---UUCUGCCGCGA--------------CUGG- -5'
11676 5' -51.5 NC_003102.1 + 42379 0.66 0.986063
Target:  5'- -uGUCGAGAUcagcuggaacgugugGAAcGGCGGCGgaGGCg -3'
miRNA:   3'- agUAGCUCUG---------------UUU-CUGCCGCgaCUGg -5'
11676 5' -51.5 NC_003102.1 + 93595 0.67 0.976885
Target:  5'- gCGUUGGGAUuuuugcGCGGCGCUcucgccucGACCg -3'
miRNA:   3'- aGUAGCUCUGuuuc--UGCCGCGA--------CUGG- -5'
11676 5' -51.5 NC_003102.1 + 126184 0.67 0.976634
Target:  5'- gCGUCuuGAUAGAaacucacgaaaauGGCGGCGC-GACCg -3'
miRNA:   3'- aGUAGcuCUGUUU-------------CUGCCGCGaCUGG- -5'
11676 5' -51.5 NC_003102.1 + 121417 0.67 0.974291
Target:  5'- aCAgggCGAGAagaugcaauccCAAuacGGGCguguGGCGCUGACCc -3'
miRNA:   3'- aGUa--GCUCU-----------GUU---UCUG----CCGCGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 107517 0.67 0.974291
Target:  5'- gUCAagGuuGCGcAGACGGUGCUGAa- -3'
miRNA:   3'- -AGUagCucUGUuUCUGCCGCGACUgg -5'
11676 5' -51.5 NC_003102.1 + 101720 0.68 0.965248
Target:  5'- aCAUCGAuacggaaacGACAuAGACguGGUcaacaaGCUGACCg -3'
miRNA:   3'- aGUAGCU---------CUGUuUCUG--CCG------CGACUGG- -5'
11676 5' -51.5 NC_003102.1 + 102446 1.14 0.003676
Target:  5'- uUCAUCGAGACAAAGACGGCGCUGACCa -3'
miRNA:   3'- -AGUAGCUCUGUUUCUGCCGCGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.