Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11676 | 5' | -51.5 | NC_003102.1 | + | 100745 | 0.7 | 0.900597 |
Target: 5'- uUCGUCgGAGACGGAGuuuuUGGCGCUacgggagGACg -3' miRNA: 3'- -AGUAG-CUCUGUUUCu---GCCGCGA-------CUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 65250 | 0.66 | 0.989983 |
Target: 5'- aCAUCGGGcCGaagcggagGAGGCGGCGauaGACa -3' miRNA: 3'- aGUAGCUCuGU--------UUCUGCCGCga-CUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 20876 | 0.66 | 0.989983 |
Target: 5'- ---cCGAGuCGAcuugGGGCGGCGgUGGCa -3' miRNA: 3'- aguaGCUCuGUU----UCUGCCGCgACUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 134793 | 0.66 | 0.989581 |
Target: 5'- -uGUUGAG-CGgcGACGGUucgcaaucgugcgaGCUGGCCa -3' miRNA: 3'- agUAGCUCuGUuuCUGCCG--------------CGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 74014 | 0.66 | 0.987058 |
Target: 5'- aUCcUCGAGAUucGGGGCcgagGGUGCUG-CCg -3' miRNA: 3'- -AGuAGCUCUGu-UUCUG----CCGCGACuGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 87435 | 0.66 | 0.985367 |
Target: 5'- -gAUCGAucGACGucggcGACGGCGgUGGCa -3' miRNA: 3'- agUAGCU--CUGUuu---CUGCCGCgACUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 112998 | 0.67 | 0.979281 |
Target: 5'- gUCGUCGuGGCGGugguGGuguCGGCGgUGGCg -3' miRNA: 3'- -AGUAGCuCUGUU----UCu--GCCGCgACUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 135082 | 0.67 | 0.971491 |
Target: 5'- -gAUUGgagaGGGCGAcGACGGCGgUGGCUg -3' miRNA: 3'- agUAGC----UCUGUUuCUGCCGCgACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 136440 | 0.68 | 0.968479 |
Target: 5'- cCAUCGucAGACAGaAGAuUGGCGC-GAUCg -3' miRNA: 3'- aGUAGC--UCUGUU-UCU-GCCGCGaCUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 120944 | 0.68 | 0.964234 |
Target: 5'- -gGUCGAcuugaauguaacccGGCGGAcACGGCGC-GACCg -3' miRNA: 3'- agUAGCU--------------CUGUUUcUGCCGCGaCUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 95160 | 0.7 | 0.911411 |
Target: 5'- gCAUCGuguacggauuguuGGCAAuguuguGGuaaACGGCGCUGACCc -3' miRNA: 3'- aGUAGCu------------CUGUU------UC---UGCCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 131471 | 0.69 | 0.940935 |
Target: 5'- cCAUUGGGACGAGacGAUGGCGgacgGAUCg -3' miRNA: 3'- aGUAGCUCUGUUU--CUGCCGCga--CUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 102716 | 0.69 | 0.940935 |
Target: 5'- aCGUCGAcaauGACGAcGGCGGUGCcGAUg -3' miRNA: 3'- aGUAGCU----CUGUUuCUGCCGCGaCUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 52978 | 0.69 | 0.940935 |
Target: 5'- aUUGUUGAGACccuuGAUGGCGCgGuCCg -3' miRNA: 3'- -AGUAGCUCUGuuu-CUGCCGCGaCuGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 4403 | 0.68 | 0.954175 |
Target: 5'- uUCAUCGGGuuc--GACGGgcUGCUGAUCa -3' miRNA: 3'- -AGUAGCUCuguuuCUGCC--GCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 34307 | 0.68 | 0.958101 |
Target: 5'- uUCAaCGAGuuu-AGACGGCGCgucGACa -3' miRNA: 3'- -AGUaGCUCuguuUCUGCCGCGa--CUGg -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 79913 | 0.68 | 0.958101 |
Target: 5'- aCGUUG-GACGGcacGAUGGCGUcGACCa -3' miRNA: 3'- aGUAGCuCUGUUu--CUGCCGCGaCUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 102446 | 1.14 | 0.003676 |
Target: 5'- uUCAUCGAGACAAAGACGGCGCUGACCa -3' miRNA: 3'- -AGUAGCUCUGUUUCUGCCGCGACUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 75862 | 0.66 | 0.989983 |
Target: 5'- gUCGUCGu--CGGuGACGGCGCc-GCCg -3' miRNA: 3'- -AGUAGCucuGUUuCUGCCGCGacUGG- -5' |
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11676 | 5' | -51.5 | NC_003102.1 | + | 91359 | 0.66 | 0.989983 |
Target: 5'- -gAUCGAGACGAuucugagcGGCGGcCGCgu-CCg -3' miRNA: 3'- agUAGCUCUGUUu-------CUGCC-GCGacuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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