miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 6729 0.69 0.563659
Target:  5'- gUUGGCGCUGCCGagGCUgauGCUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUGGUggCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 29321 0.69 0.553704
Target:  5'- aUAAcCGUCuCCuCCGCCAUCGCCuCCu -3'
miRNA:   3'- aAUU-GCGGuGGuGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 52481 0.71 0.485798
Target:  5'- --uGCGCCuaucggaCGCgGCCACCGCCAa- -3'
miRNA:   3'- aauUGCGGug-----GUGgCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 105348 0.71 0.47641
Target:  5'- ---uCGUCGCCGCUGUUAUCGgCACCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 18199 0.71 0.467113
Target:  5'- -cGGCGCCGCCGuuuuggaaCGCgACCGCCAa- -3'
miRNA:   3'- aaUUGCGGUGGUg-------GCGgUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 57889 0.71 0.46158
Target:  5'- -aAGCGCCACgGCCacguucGCCGagaggcuaaucgcguUCGCCGCCg -3'
miRNA:   3'- aaUUGCGGUGgUGG------CGGU---------------GGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 97242 0.71 0.456996
Target:  5'- -aGACGUCcaaguguuucucgAUCGCCGCCaAUCGCUACCa -3'
miRNA:   3'- aaUUGCGG-------------UGGUGGCGG-UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 40658 0.71 0.448806
Target:  5'- -aGACGUUACCGCCGCCG-CGUCAg- -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUgGCGGUgg -5'
11680 3' -59 NC_003102.1 + 29508 0.73 0.379815
Target:  5'- -aGACGgCA-CACCGCCAUUGCgGCCg -3'
miRNA:   3'- aaUUGCgGUgGUGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 78604 0.73 0.379815
Target:  5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3'
miRNA:   3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 18305 0.73 0.371703
Target:  5'- -cGACGCCGacgaACCuGCCGCCGUCGCg -3'
miRNA:   3'- aaUUGCGGUgg--UGG-CGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 49050 0.73 0.36371
Target:  5'- gUAugGCUAUCucuUCGCCuCCGCCACUg -3'
miRNA:   3'- aAUugCGGUGGu--GGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 62176 0.73 0.355837
Target:  5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3'
miRNA:   3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5'
11680 3' -59 NC_003102.1 + 38738 0.73 0.348085
Target:  5'- --cGCGUCACCGucaucgucgucgUCGUCGCCGCCGCUu -3'
miRNA:   3'- aauUGCGGUGGU------------GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 42190 0.73 0.340453
Target:  5'- --uACGCU-UCAUCGCCuCCGCCGCCg -3'
miRNA:   3'- aauUGCGGuGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6609 0.74 0.332944
Target:  5'- gUUGGCGCUGgCGCUGCCgagACUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUgGUGGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 135263 0.74 0.318292
Target:  5'- -aAACGCgucgaaccaGCCACCGCCGUCGUCGCCc -3'
miRNA:   3'- aaUUGCGg--------UGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 135338 0.74 0.311151
Target:  5'- -gAAUGCCACgACgGCUAUCGCUACUa -3'
miRNA:   3'- aaUUGCGGUGgUGgCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 56888 0.74 0.311151
Target:  5'- aUGAUGCCGUCGCCuCCGCCuCCACCa -3'
miRNA:   3'- aAUUGCGGUGGUGGcGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.