miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 42190 0.73 0.340453
Target:  5'- --uACGCU-UCAUCGCCuCCGCCGCCg -3'
miRNA:   3'- aauUGCGGuGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 45984 0.84 0.066964
Target:  5'- --cACGaUACCACCGCCGCCGCCAUCa -3'
miRNA:   3'- aauUGCgGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 46018 0.82 0.09199
Target:  5'- ----aGCCGCCGCCGCCGCUGCCucuucuaucGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGCGG---------UGG- -5'
11680 3' -59 NC_003102.1 + 48788 0.66 0.753531
Target:  5'- aUAGcCGUCGCUACUGCUcUCGUCGCUg -3'
miRNA:   3'- aAUU-GCGGUGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 48839 0.88 0.038096
Target:  5'- -gGGCGUuuCGCCGCCGUCGCCGCCGCCg -3'
miRNA:   3'- aaUUGCG--GUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 49050 0.73 0.36371
Target:  5'- gUAugGCUAUCucuUCGCCuCCGCCACUg -3'
miRNA:   3'- aAUugCGGUGGu--GGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 49154 0.76 0.229283
Target:  5'- cUGACuCCAUUACCgauGCCGCCGCCGCUg -3'
miRNA:   3'- aAUUGcGGUGGUGG---CGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 51008 0.75 0.277272
Target:  5'- aUAuCGCCACCAUCgGUCACgGUCGCCg -3'
miRNA:   3'- aAUuGCGGUGGUGG-CGGUGgCGGUGG- -5'
11680 3' -59 NC_003102.1 + 52481 0.71 0.485798
Target:  5'- --uGCGCCuaucggaCGCgGCCACCGCCAa- -3'
miRNA:   3'- aauUGCGGug-----GUGgCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 56888 0.74 0.311151
Target:  5'- aUGAUGCCGUCGCCuCCGCCuCCACCa -3'
miRNA:   3'- aAUUGCGGUGGUGGcGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 57889 0.71 0.46158
Target:  5'- -aAGCGCCACgGCCacguucGCCGagaggcuaaucgcguUCGCCGCCg -3'
miRNA:   3'- aaUUGCGGUGgUGG------CGGU---------------GGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59259 0.66 0.753531
Target:  5'- -aAGCGCCGUCGgCGCaCACaaagucgcaucUGCCACCa -3'
miRNA:   3'- aaUUGCGGUGGUgGCG-GUG-----------GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59348 0.81 0.119394
Target:  5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 60361 0.93 0.017305
Target:  5'- ---uCGCCGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 62176 0.73 0.355837
Target:  5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3'
miRNA:   3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5'
11680 3' -59 NC_003102.1 + 66915 0.67 0.684832
Target:  5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 67862 0.66 0.734294
Target:  5'- ---uCGCCAgCGCUGUUACCGUCuucagACCa -3'
miRNA:   3'- aauuGCGGUgGUGGCGGUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 71475 0.8 0.12572
Target:  5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 72543 0.86 0.049888
Target:  5'- ---uCGUUGCCGCCGCCGCCGCUACCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 75688 0.66 0.762996
Target:  5'- --uACGCUcgaaAUCGgCGgCGCCGUCACCg -3'
miRNA:   3'- aauUGCGG----UGGUgGCgGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.