miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 22689 0.67 0.704807
Target:  5'- gUUGGCGCCgauGCCgACCGCUucgACCGCUcagauACUg -3'
miRNA:   3'- -AAUUGCGG---UGG-UGGCGG---UGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 22938 0.67 0.664687
Target:  5'- --uAUGCCGUacgaaAgCGUCGCCGCCGCCg -3'
miRNA:   3'- aauUGCGGUGg----UgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 23540 0.69 0.573661
Target:  5'- -gGACG-CGCCGCCuaCGcCCGCCACa -3'
miRNA:   3'- aaUUGCgGUGGUGGcgGU-GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 24139 0.67 0.714708
Target:  5'- -gAugGUCAUgGCCGCUGCCGUC-UCg -3'
miRNA:   3'- aaUugCGGUGgUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 24338 0.66 0.728451
Target:  5'- -gGGCGUgACCACCGCUgaauuggacaaucuaAUCGCCgagacggcagcgGCCa -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG---------------UGGCGG------------UGG- -5'
11680 3' -59 NC_003102.1 + 29321 0.69 0.553704
Target:  5'- aUAAcCGUCuCCuCCGCCAUCGCCuCCu -3'
miRNA:   3'- aAUU-GCGGuGGuGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 29508 0.73 0.379815
Target:  5'- -aGACGgCA-CACCGCCAUUGCgGCCg -3'
miRNA:   3'- aaUUGCgGUgGUGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 30562 0.66 0.762996
Target:  5'- ----aGCCACaauGCCGCCuACgGgCACCa -3'
miRNA:   3'- aauugCGGUGg--UGGCGG-UGgCgGUGG- -5'
11680 3' -59 NC_003102.1 + 31544 0.76 0.240581
Target:  5'- -cGACGUCACCGCUuCUACCGCC-CCu -3'
miRNA:   3'- aaUUGCGGUGGUGGcGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 32454 0.68 0.644437
Target:  5'- -cGugGUCGCgACCGUaGCCGUCACa -3'
miRNA:   3'- aaUugCGGUGgUGGCGgUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 32564 0.66 0.753531
Target:  5'- ---uUGCCGCCcaGCCGCaGCCGUCugaaaACCg -3'
miRNA:   3'- aauuGCGGUGG--UGGCGgUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 33267 0.79 0.146603
Target:  5'- -cAACGCCGugcagUCGCCGCCGCCGCCGa- -3'
miRNA:   3'- aaUUGCGGU-----GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 36546 0.68 0.624149
Target:  5'- -gGACgGCCGacggaucggugUgAUCGCCGCCGCgCACCa -3'
miRNA:   3'- aaUUG-CGGU-----------GgUGGCGGUGGCG-GUGG- -5'
11680 3' -59 NC_003102.1 + 37716 0.88 0.040213
Target:  5'- -----aCCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- aauugcGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 37880 0.68 0.624149
Target:  5'- --uGC-CCGCCACCGUCAUC-UCGCCg -3'
miRNA:   3'- aauUGcGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 38738 0.73 0.348085
Target:  5'- --cGCGUCACCGucaucgucgucgUCGUCGCCGCCGCUu -3'
miRNA:   3'- aauUGCGGUGGU------------GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 40395 0.66 0.753531
Target:  5'- aUGACcaaUACCACUauGCUGCCGCCgGCCg -3'
miRNA:   3'- aAUUGcg-GUGGUGG--CGGUGGCGG-UGG- -5'
11680 3' -59 NC_003102.1 + 40658 0.71 0.448806
Target:  5'- -aGACGUUACCGCCGCCG-CGUCAg- -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUgGCGGUgg -5'
11680 3' -59 NC_003102.1 + 41307 0.66 0.734294
Target:  5'- -cGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3'
miRNA:   3'- aaUUGCG------------GUGGUGGCGG----UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 41410 0.66 0.72454
Target:  5'- -cAGCGCCGaauacguuUCGCCGUCAacguuuUCGUCGCCg -3'
miRNA:   3'- aaUUGCGGU--------GGUGGCGGU------GGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.