miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 22689 0.67 0.704807
Target:  5'- gUUGGCGCCgauGCCgACCGCUucgACCGCUcagauACUg -3'
miRNA:   3'- -AAUUGCGG---UGG-UGGCGG---UGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 22938 0.67 0.664687
Target:  5'- --uAUGCCGUacgaaAgCGUCGCCGCCGCCg -3'
miRNA:   3'- aauUGCGGUGg----UgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 118487 0.67 0.674776
Target:  5'- -gGGCGCCGUCGCaCGCCAucCCGuCUACUa -3'
miRNA:   3'- aaUUGCGGUGGUG-GCGGU--GGC-GGUGG- -5'
11680 3' -59 NC_003102.1 + 87880 0.67 0.664687
Target:  5'- -cGACGCCuucuACCAUCGCCGCuCGau-CCg -3'
miRNA:   3'- aaUUGCGG----UGGUGGCGGUG-GCgguGG- -5'
11680 3' -59 NC_003102.1 + 24139 0.67 0.714708
Target:  5'- -gAugGUCAUgGCCGCUGCCGUC-UCg -3'
miRNA:   3'- aaUugCGGUGgUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 66915 0.67 0.684832
Target:  5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 119228 0.67 0.674776
Target:  5'- --cACGCCACCGCgaucacgaCGaCUAUCGCUAUCg -3'
miRNA:   3'- aauUGCGGUGGUG--------GC-GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 36546 0.68 0.624149
Target:  5'- -gGACgGCCGacggaucggugUgAUCGCCGCCGCgCACCa -3'
miRNA:   3'- aaUUG-CGGU-----------GgUGGCGGUGGCG-GUGG- -5'
11680 3' -59 NC_003102.1 + 8951 0.68 0.624149
Target:  5'- --uACGCggcaGCUACCaCCACUGCCACg -3'
miRNA:   3'- aauUGCGg---UGGUGGcGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 20340 0.68 0.607933
Target:  5'- -cGACGCCugaauuGCCAuccgagucagugccuUCGCCauaGCCGUCACCg -3'
miRNA:   3'- aaUUGCGG------UGGU---------------GGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 91389 0.68 0.614011
Target:  5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3'
miRNA:   3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 133741 0.68 0.614011
Target:  5'- --cGCGUCGCaGCCGCCGuagugUCGCCGCa -3'
miRNA:   3'- aauUGCGGUGgUGGCGGU-----GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 37880 0.68 0.624149
Target:  5'- --uGC-CCGCCACCGUCAUC-UCGCCg -3'
miRNA:   3'- aauUGcGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 14950 0.68 0.618065
Target:  5'- ---cCGCUGCCGCCGCUcgaagacuugguuucGuuGCCGCUg -3'
miRNA:   3'- aauuGCGGUGGUGGCGG---------------UggCGGUGG- -5'
11680 3' -59 NC_003102.1 + 32454 0.68 0.644437
Target:  5'- -cGugGUCGCgACCGUaGCCGUCACa -3'
miRNA:   3'- aaUugCGGUGgUGGCGgUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 115137 0.68 0.623135
Target:  5'- cUGuCGCCGCCGuuGCCuuuggacACCGCCGu- -3'
miRNA:   3'- aAUuGCGGUGGUggCGG-------UGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 119175 0.68 0.624149
Target:  5'- gUGGgGUCACgACCGCCGCgGCUAa- -3'
miRNA:   3'- aAUUgCGGUGgUGGCGGUGgCGGUgg -5'
11680 3' -59 NC_003102.1 + 29321 0.69 0.553704
Target:  5'- aUAAcCGUCuCCuCCGCCAUCGCCuCCu -3'
miRNA:   3'- aAUU-GCGGuGGuGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 6729 0.69 0.563659
Target:  5'- gUUGGCGCUGCCGagGCUgauGCUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUGGUggCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 2468 0.69 0.593781
Target:  5'- gUUAAUGUCGCgACuCGUaaCACCGUCGCCc -3'
miRNA:   3'- -AAUUGCGGUGgUG-GCG--GUGGCGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.