miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 16632 0.79 0.16388
Target:  5'- -aAugGCCGCCgguuugaccuguuggACCGCCGCCGCgACUg -3'
miRNA:   3'- aaUugCGGUGG---------------UGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 21059 0.78 0.166373
Target:  5'- -aGACgGCCGuCCgaaauGCUGCCACCGCCGCCc -3'
miRNA:   3'- aaUUG-CGGU-GG-----UGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6697 0.78 0.170604
Target:  5'- cUGAUGCUGCCGauggUGCCGCUGCCGCCg -3'
miRNA:   3'- aAUUGCGGUGGUg---GCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 15705 0.77 0.213179
Target:  5'- -cGACGCCgacgagucgcGCgAUCGCCAUUGCCACCa -3'
miRNA:   3'- aaUUGCGG----------UGgUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 129022 0.77 0.218436
Target:  5'- -cGGCGCCgGCCGCCGCUACuCGuCCugCg -3'
miRNA:   3'- aaUUGCGG-UGGUGGCGGUG-GC-GGugG- -5'
11680 3' -59 NC_003102.1 + 89865 0.76 0.223804
Target:  5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3'
miRNA:   3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 49154 0.76 0.229283
Target:  5'- cUGACuCCAUUACCgauGCCGCCGCCGCUg -3'
miRNA:   3'- aAUUGcGGUGGUGG---CGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 31544 0.76 0.240581
Target:  5'- -cGACGUCACCGCUuCUACCGCC-CCu -3'
miRNA:   3'- aaUUGCGGUGGUGGcGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 92262 0.76 0.240581
Target:  5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3'
miRNA:   3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 51008 0.75 0.277272
Target:  5'- aUAuCGCCACCAUCgGUCACgGUCGCCg -3'
miRNA:   3'- aAUuGCGGUGGUGG-CGGUGgCGGUGG- -5'
11680 3' -59 NC_003102.1 + 87603 0.75 0.286452
Target:  5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5'
11680 3' -59 NC_003102.1 + 56888 0.74 0.311151
Target:  5'- aUGAUGCCGUCGCCuCCGCCuCCACCa -3'
miRNA:   3'- aAUUGCGGUGGUGGcGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 135338 0.74 0.311151
Target:  5'- -gAAUGCCACgACgGCUAUCGCUACUa -3'
miRNA:   3'- aaUUGCGGUGgUGgCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 135263 0.74 0.318292
Target:  5'- -aAACGCgucgaaccaGCCACCGCCGUCGUCGCCc -3'
miRNA:   3'- aaUUGCGg--------UGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6609 0.74 0.332944
Target:  5'- gUUGGCGCUGgCGCUGCCgagACUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUgGUGGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 42190 0.73 0.340453
Target:  5'- --uACGCU-UCAUCGCCuCCGCCGCCg -3'
miRNA:   3'- aauUGCGGuGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 38738 0.73 0.348085
Target:  5'- --cGCGUCACCGucaucgucgucgUCGUCGCCGCCGCUu -3'
miRNA:   3'- aauUGCGGUGGU------------GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 62176 0.73 0.355837
Target:  5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3'
miRNA:   3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5'
11680 3' -59 NC_003102.1 + 49050 0.73 0.36371
Target:  5'- gUAugGCUAUCucuUCGCCuCCGCCACUg -3'
miRNA:   3'- aAUugCGGUGGu--GGCGGuGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.