miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 115165 1.1 0.001169
Target:  5'- uUUAACGCCACCACCGCCACCGCCACCg -3'
miRNA:   3'- -AAUUGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 101871 1 0.005174
Target:  5'- ---cCGCCGCCACCGCCACCGCCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 17898 0.99 0.006447
Target:  5'- ---cCGCCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 134538 0.96 0.010864
Target:  5'- --uGCGaCCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- aauUGC-GGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 60361 0.93 0.017305
Target:  5'- ---uCGCCGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 111422 0.89 0.031515
Target:  5'- aUGACGCCGCCGCCGCCGCCuCCuCCg -3'
miRNA:   3'- aAUUGCGGUGGUGGCGGUGGcGGuGG- -5'
11680 3' -59 NC_003102.1 + 48839 0.88 0.038096
Target:  5'- -gGGCGUuuCGCCGCCGUCGCCGCCGCCg -3'
miRNA:   3'- aaUUGCG--GUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 37716 0.88 0.040213
Target:  5'- -----aCCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- aauugcGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 1753 0.87 0.047275
Target:  5'- ---cCGCCACCACCaccaCCACCGCCGCCa -3'
miRNA:   3'- aauuGCGGUGGUGGc---GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 72543 0.86 0.049888
Target:  5'- ---uCGUUGCCGCCGCCGCCGCUACCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 119481 0.85 0.065203
Target:  5'- -gAACGCCACCGgCGCCGCCGUUugCg -3'
miRNA:   3'- aaUUGCGGUGGUgGCGGUGGCGGugG- -5'
11680 3' -59 NC_003102.1 + 45984 0.84 0.066964
Target:  5'- --cACGaUACCACCGCCGCCGCCAUCa -3'
miRNA:   3'- aauUGCgGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 111568 0.83 0.080634
Target:  5'- -cGGCGUCAUCAUCGCCACCGCUaaACCa -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGG--UGG- -5'
11680 3' -59 NC_003102.1 + 128951 0.82 0.09199
Target:  5'- ----gGCCGCCGCCGCUACC-CCGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 46018 0.82 0.09199
Target:  5'- ----aGCCGCCGCCGCCGCUGCCucuucuaucGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGCGG---------UGG- -5'
11680 3' -59 NC_003102.1 + 113170 0.82 0.094437
Target:  5'- ---cCGCCACCGCCGacaccaCCACCGCCACg -3'
miRNA:   3'- aauuGCGGUGGUGGC------GGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 59348 0.81 0.119394
Target:  5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 71475 0.8 0.12572
Target:  5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 1831 0.79 0.146603
Target:  5'- ---cUGCCGacacaaauuUUACCGCCGCCGCCACCa -3'
miRNA:   3'- aauuGCGGU---------GGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 33267 0.79 0.146603
Target:  5'- -cAACGCCGugcagUCGCCGCCGCCGCCGa- -3'
miRNA:   3'- aaUUGCGGU-----GGUGGCGGUGGCGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.