miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 1561 0.66 0.771418
Target:  5'- -cGACGCUccguaaaAUUACa-CCACCGCCAUCa -3'
miRNA:   3'- aaUUGCGG-------UGGUGgcGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 1753 0.87 0.047275
Target:  5'- ---cCGCCACCACCaccaCCACCGCCGCCa -3'
miRNA:   3'- aauuGCGGUGGUGGc---GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 1831 0.79 0.146603
Target:  5'- ---cUGCCGacacaaauuUUACCGCCGCCGCCACCa -3'
miRNA:   3'- aauuGCGGU---------GGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 2468 0.69 0.593781
Target:  5'- gUUAAUGUCGCgACuCGUaaCACCGUCGCCc -3'
miRNA:   3'- -AAUUGCGGUGgUG-GCG--GUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6609 0.74 0.332944
Target:  5'- gUUGGCGCUGgCGCUGCCgagACUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUgGUGGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6697 0.78 0.170604
Target:  5'- cUGAUGCUGCCGauggUGCCGCUGCCGCCg -3'
miRNA:   3'- aAUUGCGGUGGUg---GCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6729 0.69 0.563659
Target:  5'- gUUGGCGCUGCCGagGCUgauGCUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUGGUggCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6750 0.66 0.72454
Target:  5'- -cAACGUCACCAUCGgUAgCGUCAUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCgGUgGCGGUGg -5'
11680 3' -59 NC_003102.1 + 6834 0.69 0.573661
Target:  5'- -cAACGCCagcggcaacGCCAaCGCCAaCGUCACCa -3'
miRNA:   3'- aaUUGCGG---------UGGUgGCGGUgGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 8951 0.68 0.624149
Target:  5'- --uACGCggcaGCUACCaCCACUGCCACg -3'
miRNA:   3'- aauUGCGg---UGGUGGcGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 14950 0.68 0.618065
Target:  5'- ---cCGCUGCCGCCGCUcgaagacuugguuucGuuGCCGCUg -3'
miRNA:   3'- aauuGCGGUGGUGGCGG---------------UggCGGUGG- -5'
11680 3' -59 NC_003102.1 + 15705 0.77 0.213179
Target:  5'- -cGACGCCgacgagucgcGCgAUCGCCAUUGCCACCa -3'
miRNA:   3'- aaUUGCGG----------UGgUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 16632 0.79 0.16388
Target:  5'- -aAugGCCGCCgguuugaccuguuggACCGCCGCCGCgACUg -3'
miRNA:   3'- aaUugCGGUGG---------------UGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 17898 0.99 0.006447
Target:  5'- ---cCGCCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 18199 0.71 0.467113
Target:  5'- -cGGCGCCGCCGuuuuggaaCGCgACCGCCAa- -3'
miRNA:   3'- aaUUGCGGUGGUg-------GCGgUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 18305 0.73 0.371703
Target:  5'- -cGACGCCGacgaACCuGCCGCCGUCGCg -3'
miRNA:   3'- aaUUGCGGUgg--UGG-CGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 18640 0.66 0.753531
Target:  5'- -cGACGgCGCC-CUGCagaGCCGUgACCu -3'
miRNA:   3'- aaUUGCgGUGGuGGCGg--UGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 20340 0.68 0.607933
Target:  5'- -cGACGCCugaauuGCCAuccgagucagugccuUCGCCauaGCCGUCACCg -3'
miRNA:   3'- aaUUGCGG------UGGU---------------GGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 21059 0.78 0.166373
Target:  5'- -aGACgGCCGuCCgaaauGCUGCCACCGCCGCCc -3'
miRNA:   3'- aaUUG-CGGU-GG-----UGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 22653 0.66 0.72454
Target:  5'- --cACGCCGCgACuCGCCggGCUGCCuuCg -3'
miRNA:   3'- aauUGCGGUGgUG-GCGG--UGGCGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.