miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 135338 0.74 0.311151
Target:  5'- -gAAUGCCACgACgGCUAUCGCUACUa -3'
miRNA:   3'- aaUUGCGGUGgUGgCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 135263 0.74 0.318292
Target:  5'- -aAACGCgucgaaccaGCCACCGCCGUCGUCGCCc -3'
miRNA:   3'- aaUUGCGg--------UGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 134972 0.66 0.760168
Target:  5'- -aGugGCCAgCucgcacgauugcgaACCGUCGCCGCUcaacacGCCg -3'
miRNA:   3'- aaUugCGGUgG--------------UGGCGGUGGCGG------UGG- -5'
11680 3' -59 NC_003102.1 + 134538 0.96 0.010864
Target:  5'- --uGCGaCCGCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- aauUGC-GGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 133741 0.68 0.614011
Target:  5'- --cGCGUCGCaGCCGCCGuagugUCGCCGCa -3'
miRNA:   3'- aauUGCGGUGgUGGCGGU-----GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 129967 0.66 0.772347
Target:  5'- -cAACGUUACCGCCGaCCaggauGCgCGUCGCUu -3'
miRNA:   3'- aaUUGCGGUGGUGGC-GG-----UG-GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 129022 0.77 0.218436
Target:  5'- -cGGCGCCgGCCGCCGCUACuCGuCCugCg -3'
miRNA:   3'- aaUUGCGG-UGGUGGCGGUG-GC-GGugG- -5'
11680 3' -59 NC_003102.1 + 128951 0.82 0.09199
Target:  5'- ----gGCCGCCGCCGCUACC-CCGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 119481 0.85 0.065203
Target:  5'- -gAACGCCACCGgCGCCGCCGUUugCg -3'
miRNA:   3'- aaUUGCGGUGGUgGCGGUGGCGGugG- -5'
11680 3' -59 NC_003102.1 + 119228 0.67 0.674776
Target:  5'- --cACGCCACCGCgaucacgaCGaCUAUCGCUAUCg -3'
miRNA:   3'- aauUGCGGUGGUG--------GC-GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 119175 0.68 0.624149
Target:  5'- gUGGgGUCACgACCGCCGCgGCUAa- -3'
miRNA:   3'- aAUUgCGGUGgUGGCGGUGgCGGUgg -5'
11680 3' -59 NC_003102.1 + 118487 0.67 0.674776
Target:  5'- -gGGCGCCGUCGCaCGCCAucCCGuCUACUa -3'
miRNA:   3'- aaUUGCGGUGGUG-GCGGU--GGC-GGUGG- -5'
11680 3' -59 NC_003102.1 + 115165 1.1 0.001169
Target:  5'- uUUAACGCCACCACCGCCACCGCCACCg -3'
miRNA:   3'- -AAUUGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 115137 0.68 0.623135
Target:  5'- cUGuCGCCGCCGuuGCCuuuggacACCGCCGu- -3'
miRNA:   3'- aAUuGCGGUGGUggCGG-------UGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 113170 0.82 0.094437
Target:  5'- ---cCGCCACCGCCGacaccaCCACCGCCACg -3'
miRNA:   3'- aauuGCGGUGGUGGC------GGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 111568 0.83 0.080634
Target:  5'- -cGGCGUCAUCAUCGCCACCGCUaaACCa -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGG--UGG- -5'
11680 3' -59 NC_003102.1 + 111422 0.89 0.031515
Target:  5'- aUGACGCCGCCGCCGCCGCCuCCuCCg -3'
miRNA:   3'- aAUUGCGGUGGUGGCGGUGGcGGuGG- -5'
11680 3' -59 NC_003102.1 + 105348 0.71 0.47641
Target:  5'- ---uCGUCGCCGCUGUUAUCGgCACCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 101871 1 0.005174
Target:  5'- ---cCGCCGCCACCGCCACCGCCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 99960 0.66 0.762055
Target:  5'- -aAACGUugaaagguuugugCGCgACCGUCGCCGaCCACg -3'
miRNA:   3'- aaUUGCG-------------GUGgUGGCGGUGGC-GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.