miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 22653 0.66 0.72454
Target:  5'- --cACGCCGCgACuCGCCggGCUGCCuuCg -3'
miRNA:   3'- aauUGCGGUGgUG-GCGG--UGGCGGugG- -5'
11680 3' -59 NC_003102.1 + 24338 0.66 0.728451
Target:  5'- -gGGCGUgACCACCGCUgaauuggacaaucuaAUCGCCgagacggcagcgGCCa -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG---------------UGGCGG------------UGG- -5'
11680 3' -59 NC_003102.1 + 80716 0.66 0.734294
Target:  5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 67862 0.66 0.734294
Target:  5'- ---uCGCCAgCGCUGUUACCGUCuucagACCa -3'
miRNA:   3'- aauuGCGGUgGUGGCGGUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 18640 0.66 0.753531
Target:  5'- -cGACGgCGCC-CUGCagaGCCGUgACCu -3'
miRNA:   3'- aaUUGCgGUGGuGGCGg--UGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 6750 0.66 0.72454
Target:  5'- -cAACGUCACCAUCGgUAgCGUCAUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCgGUgGCGGUGg -5'
11680 3' -59 NC_003102.1 + 41410 0.66 0.72454
Target:  5'- -cAGCGCCGaauacguuUCGCCGUCAacguuuUCGUCGCCg -3'
miRNA:   3'- aaUUGCGGU--------GGUGGCGGU------GGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 91189 0.66 0.72454
Target:  5'- -gGACGCgGCCGCCGCUcagaAUCGUC-UCg -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG----UGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 41307 0.66 0.734294
Target:  5'- -cGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3'
miRNA:   3'- aaUUGCG------------GUGGUGGCGG----UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 40395 0.66 0.753531
Target:  5'- aUGACcaaUACCACUauGCUGCCGCCgGCCg -3'
miRNA:   3'- aAUUGcg-GUGGUGG--CGGUGGCGG-UGG- -5'
11680 3' -59 NC_003102.1 + 134972 0.66 0.760168
Target:  5'- -aGugGCCAgCucgcacgauugcgaACCGUCGCCGCUcaacacGCCg -3'
miRNA:   3'- aaUugCGGUgG--------------UGGCGGUGGCGG------UGG- -5'
11680 3' -59 NC_003102.1 + 48788 0.66 0.753531
Target:  5'- aUAGcCGUCGCUACUGCUcUCGUCGCUg -3'
miRNA:   3'- aAUU-GCGGUGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59259 0.66 0.753531
Target:  5'- -aAGCGCCGUCGgCGCaCACaaagucgcaucUGCCACCa -3'
miRNA:   3'- aaUUGCGGUGGUgGCG-GUG-----------GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 99960 0.66 0.762055
Target:  5'- -aAACGUugaaagguuugugCGCgACCGUCGCCGaCCACg -3'
miRNA:   3'- aaUUGCG-------------GUGgUGGCGGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 30562 0.66 0.762996
Target:  5'- ----aGCCACaauGCCGCCuACgGgCACCa -3'
miRNA:   3'- aauugCGGUGg--UGGCGG-UGgCgGUGG- -5'
11680 3' -59 NC_003102.1 + 84410 0.66 0.753531
Target:  5'- -aAACGUCGCCuCCuaCGCCGuCCAUg -3'
miRNA:   3'- aaUUGCGGUGGuGGcgGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 1561 0.66 0.771418
Target:  5'- -cGACGCUccguaaaAUUACa-CCACCGCCAUCa -3'
miRNA:   3'- aaUUGCGG-------UGGUGgcGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 75688 0.66 0.762996
Target:  5'- --uACGCUcgaaAUCGgCGgCGCCGUCACCg -3'
miRNA:   3'- aauUGCGG----UGGUgGCgGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 129967 0.66 0.772347
Target:  5'- -cAACGUUACCGCCGaCCaggauGCgCGUCGCUu -3'
miRNA:   3'- aaUUGCGGUGGUGGC-GG-----UG-GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 32564 0.66 0.753531
Target:  5'- ---uUGCCGCCcaGCCGCaGCCGUCugaaaACCg -3'
miRNA:   3'- aauuGCGGUGG--UGGCGgUGGCGG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.