miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 18305 0.73 0.371703
Target:  5'- -cGACGCCGacgaACCuGCCGCCGUCGCg -3'
miRNA:   3'- aaUUGCGGUgg--UGG-CGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 89865 0.76 0.223804
Target:  5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3'
miRNA:   3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 49154 0.76 0.229283
Target:  5'- cUGACuCCAUUACCgauGCCGCCGCCGCUg -3'
miRNA:   3'- aAUUGcGGUGGUGG---CGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5'
11680 3' -59 NC_003102.1 + 56888 0.74 0.311151
Target:  5'- aUGAUGCCGUCGCCuCCGCCuCCACCa -3'
miRNA:   3'- aAUUGCGGUGGUGGcGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 6609 0.74 0.332944
Target:  5'- gUUGGCGCUGgCGCUGCCgagACUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUgGUGGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 42190 0.73 0.340453
Target:  5'- --uACGCU-UCAUCGCCuCCGCCGCCg -3'
miRNA:   3'- aauUGCGGuGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 38738 0.73 0.348085
Target:  5'- --cGCGUCACCGucaucgucgucgUCGUCGCCGCCGCUu -3'
miRNA:   3'- aauUGCGGUGGU------------GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 49050 0.73 0.36371
Target:  5'- gUAugGCUAUCucuUCGCCuCCGCCACUg -3'
miRNA:   3'- aAUugCGGUGGu--GGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 129022 0.77 0.218436
Target:  5'- -cGGCGCCgGCCGCCGCUACuCGuCCugCg -3'
miRNA:   3'- aaUUGCGG-UGGUGGCGGUG-GC-GGugG- -5'
11680 3' -59 NC_003102.1 + 15705 0.77 0.213179
Target:  5'- -cGACGCCgacgagucgcGCgAUCGCCAUUGCCACCa -3'
miRNA:   3'- aaUUGCGG----------UGgUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6697 0.78 0.170604
Target:  5'- cUGAUGCUGCCGauggUGCCGCUGCCGCCg -3'
miRNA:   3'- aAUUGCGGUGGUg---GCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 111422 0.89 0.031515
Target:  5'- aUGACGCCGCCGCCGCCGCCuCCuCCg -3'
miRNA:   3'- aAUUGCGGUGGUGGCGGUGGcGGuGG- -5'
11680 3' -59 NC_003102.1 + 48839 0.88 0.038096
Target:  5'- -gGGCGUuuCGCCGCCGUCGCCGCCGCCg -3'
miRNA:   3'- aaUUGCG--GUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 37716 0.88 0.040213
Target:  5'- -----aCCGCCGCCGCCGCCGCCGCCc -3'
miRNA:   3'- aauugcGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 72543 0.86 0.049888
Target:  5'- ---uCGUUGCCGCCGCCGCCGCUACCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 45984 0.84 0.066964
Target:  5'- --cACGaUACCACCGCCGCCGCCAUCa -3'
miRNA:   3'- aauUGCgGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 128951 0.82 0.09199
Target:  5'- ----gGCCGCCGCCGCUACC-CCGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 59348 0.81 0.119394
Target:  5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 71475 0.8 0.12572
Target:  5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.