miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 22653 0.66 0.72454
Target:  5'- --cACGCCGCgACuCGCCggGCUGCCuuCg -3'
miRNA:   3'- aauUGCGGUGgUG-GCGG--UGGCGGugG- -5'
11680 3' -59 NC_003102.1 + 75688 0.66 0.762996
Target:  5'- --uACGCUcgaaAUCGgCGgCGCCGUCACCg -3'
miRNA:   3'- aauUGCGG----UGGUgGCgGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 30562 0.66 0.762996
Target:  5'- ----aGCCACaauGCCGCCuACgGgCACCa -3'
miRNA:   3'- aauugCGGUGg--UGGCGG-UGgCgGUGG- -5'
11680 3' -59 NC_003102.1 + 99960 0.66 0.762055
Target:  5'- -aAACGUugaaagguuugugCGCgACCGUCGCCGaCCACg -3'
miRNA:   3'- aaUUGCG-------------GUGgUGGCGGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 48788 0.66 0.753531
Target:  5'- aUAGcCGUCGCUACUGCUcUCGUCGCUg -3'
miRNA:   3'- aAUU-GCGGUGGUGGCGGuGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59259 0.66 0.753531
Target:  5'- -aAGCGCCGUCGgCGCaCACaaagucgcaucUGCCACCa -3'
miRNA:   3'- aaUUGCGGUGGUgGCG-GUG-----------GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 84410 0.66 0.753531
Target:  5'- -aAACGUCGCCuCCuaCGCCGuCCAUg -3'
miRNA:   3'- aaUUGCGGUGGuGGcgGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 41307 0.66 0.734294
Target:  5'- -cGACGCgaaucuuguccuCGCCGCCGCUaaugGCCGUCGUCa -3'
miRNA:   3'- aaUUGCG------------GUGGUGGCGG----UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 91189 0.66 0.72454
Target:  5'- -gGACGCgGCCGCCGCUcagaAUCGUC-UCg -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG----UGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 41410 0.66 0.72454
Target:  5'- -cAGCGCCGaauacguuUCGCCGUCAacguuuUCGUCGCCg -3'
miRNA:   3'- aaUUGCGGU--------GGUGGCGGU------GGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 111422 0.89 0.031515
Target:  5'- aUGACGCCGCCGCCGCCGCCuCCuCCg -3'
miRNA:   3'- aAUUGCGGUGGUGGCGGUGGcGGuGG- -5'
11680 3' -59 NC_003102.1 + 24139 0.67 0.714708
Target:  5'- -gAugGUCAUgGCCGCUGCCGUC-UCg -3'
miRNA:   3'- aaUugCGGUGgUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 87880 0.67 0.664687
Target:  5'- -cGACGCCuucuACCAUCGCCGCuCGau-CCg -3'
miRNA:   3'- aaUUGCGG----UGGUGGCGGUG-GCgguGG- -5'
11680 3' -59 NC_003102.1 + 32454 0.68 0.644437
Target:  5'- -cGugGUCGCgACCGUaGCCGUCACa -3'
miRNA:   3'- aaUugCGGUGgUGGCGgUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 36546 0.68 0.624149
Target:  5'- -gGACgGCCGacggaucggugUgAUCGCCGCCGCgCACCa -3'
miRNA:   3'- aaUUG-CGGU-----------GgUGGCGGUGGCG-GUGG- -5'
11680 3' -59 NC_003102.1 + 37880 0.68 0.624149
Target:  5'- --uGC-CCGCCACCGUCAUC-UCGCCg -3'
miRNA:   3'- aauUGcGGUGGUGGCGGUGGcGGUGG- -5'
11680 3' -59 NC_003102.1 + 8951 0.68 0.624149
Target:  5'- --uACGCggcaGCUACCaCCACUGCCACg -3'
miRNA:   3'- aauUGCGg---UGGUGGcGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 133741 0.68 0.614011
Target:  5'- --cGCGUCGCaGCCGCCGuagugUCGCCGCa -3'
miRNA:   3'- aauUGCGGUGgUGGCGGU-----GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 91389 0.68 0.614011
Target:  5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3'
miRNA:   3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 20340 0.68 0.607933
Target:  5'- -cGACGCCugaauuGCCAuccgagucagugccuUCGCCauaGCCGUCACCg -3'
miRNA:   3'- aaUUGCGG------UGGU---------------GGCGG---UGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.