miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 78604 0.73 0.379815
Target:  5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3'
miRNA:   3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6834 0.69 0.573661
Target:  5'- -cAACGCCagcggcaacGCCAaCGCCAaCGUCACCa -3'
miRNA:   3'- aaUUGCGG---------UGGUgGCGGUgGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 22689 0.67 0.704807
Target:  5'- gUUGGCGCCgauGCCgACCGCUucgACCGCUcagauACUg -3'
miRNA:   3'- -AAUUGCGG---UGG-UGGCGG---UGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 18640 0.66 0.753531
Target:  5'- -cGACGgCGCC-CUGCagaGCCGUgACCu -3'
miRNA:   3'- aaUUGCgGUGGuGGCGg--UGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 113170 0.82 0.094437
Target:  5'- ---cCGCCACCGCCGacaccaCCACCGCCACg -3'
miRNA:   3'- aauuGCGGUGGUGGC------GGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 51008 0.75 0.277272
Target:  5'- aUAuCGCCACCAUCgGUCACgGUCGCCg -3'
miRNA:   3'- aAUuGCGGUGGUGG-CGGUGgCGGUGG- -5'
11680 3' -59 NC_003102.1 + 14950 0.68 0.618065
Target:  5'- ---cCGCUGCCGCCGCUcgaagacuugguuucGuuGCCGCUg -3'
miRNA:   3'- aauuGCGGUGGUGGCGG---------------UggCGGUGG- -5'
11680 3' -59 NC_003102.1 + 134972 0.66 0.760168
Target:  5'- -aGugGCCAgCucgcacgauugcgaACCGUCGCCGCUcaacacGCCg -3'
miRNA:   3'- aaUugCGGUgG--------------UGGCGGUGGCGG------UGG- -5'
11680 3' -59 NC_003102.1 + 87603 0.75 0.286452
Target:  5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5'
11680 3' -59 NC_003102.1 + 1561 0.66 0.771418
Target:  5'- -cGACGCUccguaaaAUUACa-CCACCGCCAUCa -3'
miRNA:   3'- aaUUGCGG-------UGGUGgcGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 2468 0.69 0.593781
Target:  5'- gUUAAUGUCGCgACuCGUaaCACCGUCGCCc -3'
miRNA:   3'- -AAUUGCGGUGgUG-GCG--GUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 62176 0.73 0.355837
Target:  5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3'
miRNA:   3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5'
11680 3' -59 NC_003102.1 + 22938 0.67 0.664687
Target:  5'- --uAUGCCGUacgaaAgCGUCGCCGCCGCCg -3'
miRNA:   3'- aauUGCGGUGg----UgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 66915 0.67 0.684832
Target:  5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 80716 0.66 0.734294
Target:  5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 32564 0.66 0.753531
Target:  5'- ---uUGCCGCCcaGCCGCaGCCGUCugaaaACCg -3'
miRNA:   3'- aauuGCGGUGG--UGGCGgUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 1753 0.87 0.047275
Target:  5'- ---cCGCCACCACCaccaCCACCGCCGCCa -3'
miRNA:   3'- aauuGCGGUGGUGGc---GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 46018 0.82 0.09199
Target:  5'- ----aGCCGCCGCCGCCGCUGCCucuucuaucGCCg -3'
miRNA:   3'- aauugCGGUGGUGGCGGUGGCGG---------UGG- -5'
11680 3' -59 NC_003102.1 + 16632 0.79 0.16388
Target:  5'- -aAugGCCGCCgguuugaccuguuggACCGCCGCCGCgACUg -3'
miRNA:   3'- aaUugCGGUGG---------------UGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 92262 0.76 0.240581
Target:  5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3'
miRNA:   3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.