miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 129967 0.66 0.772347
Target:  5'- -cAACGUUACCGCCGaCCaggauGCgCGUCGCUu -3'
miRNA:   3'- aaUUGCGGUGGUGGC-GG-----UG-GCGGUGG- -5'
11680 3' -59 NC_003102.1 + 14950 0.68 0.618065
Target:  5'- ---cCGCUGCCGCCGCUcgaagacuugguuucGuuGCCGCUg -3'
miRNA:   3'- aauuGCGGUGGUGGCGG---------------UggCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6834 0.69 0.573661
Target:  5'- -cAACGCCagcggcaacGCCAaCGCCAaCGUCACCa -3'
miRNA:   3'- aaUUGCGG---------UGGUgGCGGUgGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 115165 1.1 0.001169
Target:  5'- uUUAACGCCACCACCGCCACCGCCACCg -3'
miRNA:   3'- -AAUUGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 32564 0.66 0.753531
Target:  5'- ---uUGCCGCCcaGCCGCaGCCGUCugaaaACCg -3'
miRNA:   3'- aauuGCGGUGG--UGGCGgUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 40395 0.66 0.753531
Target:  5'- aUGACcaaUACCACUauGCUGCCGCCgGCCg -3'
miRNA:   3'- aAUUGcg-GUGGUGG--CGGUGGCGG-UGG- -5'
11680 3' -59 NC_003102.1 + 80716 0.66 0.734294
Target:  5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 24338 0.66 0.728451
Target:  5'- -gGGCGUgACCACCGCUgaauuggacaaucuaAUCGCCgagacggcagcgGCCa -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG---------------UGGCGG------------UGG- -5'
11680 3' -59 NC_003102.1 + 66915 0.67 0.684832
Target:  5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 115137 0.68 0.623135
Target:  5'- cUGuCGCCGCCGuuGCCuuuggacACCGCCGu- -3'
miRNA:   3'- aAUuGCGGUGGUggCGG-------UGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 119228 0.67 0.674776
Target:  5'- --cACGCCACCGCgaucacgaCGaCUAUCGCUAUCg -3'
miRNA:   3'- aauUGCGGUGGUG--------GC-GGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 22689 0.67 0.704807
Target:  5'- gUUGGCGCCgauGCCgACCGCUucgACCGCUcagauACUg -3'
miRNA:   3'- -AAUUGCGG---UGG-UGGCGG---UGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 1561 0.66 0.771418
Target:  5'- -cGACGCUccguaaaAUUACa-CCACCGCCAUCa -3'
miRNA:   3'- aaUUGCGG-------UGGUGgcGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 22938 0.67 0.664687
Target:  5'- --uAUGCCGUacgaaAgCGUCGCCGCCGCCg -3'
miRNA:   3'- aauUGCGGUGg----UgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 134972 0.66 0.760168
Target:  5'- -aGugGCCAgCucgcacgauugcgaACCGUCGCCGCUcaacacGCCg -3'
miRNA:   3'- aaUugCGGUgG--------------UGGCGGUGGCGG------UGG- -5'
11680 3' -59 NC_003102.1 + 6750 0.66 0.72454
Target:  5'- -cAACGUCACCAUCGgUAgCGUCAUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCgGUgGCGGUGg -5'
11680 3' -59 NC_003102.1 + 119175 0.68 0.624149
Target:  5'- gUGGgGUCACgACCGCCGCgGCUAa- -3'
miRNA:   3'- aAUUgCGGUGgUGGCGGUGgCGGUgg -5'
11680 3' -59 NC_003102.1 + 2468 0.69 0.593781
Target:  5'- gUUAAUGUCGCgACuCGUaaCACCGUCGCCc -3'
miRNA:   3'- -AAUUGCGGUGgUG-GCG--GUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 18640 0.66 0.753531
Target:  5'- -cGACGgCGCC-CUGCagaGCCGUgACCu -3'
miRNA:   3'- aaUUGCgGUGGuGGCGg--UGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 67862 0.66 0.734294
Target:  5'- ---uCGCCAgCGCUGUUACCGUCuucagACCa -3'
miRNA:   3'- aauuGCGGUgGUGGCGGUGGCGG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.