Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11680 | 3' | -59 | NC_003102.1 | + | 97242 | 0.71 | 0.456996 |
Target: 5'- -aGACGUCcaaguguuucucgAUCGCCGCCaAUCGCUACCa -3' miRNA: 3'- aaUUGCGG-------------UGGUGGCGG-UGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 92971 | 0.75 | 0.290458 |
Target: 5'- cUGACGCCGCCGCCGaUACCGUCu-- -3' miRNA: 3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 92262 | 0.76 | 0.240581 |
Target: 5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3' miRNA: 3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 91389 | 0.68 | 0.614011 |
Target: 5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3' miRNA: 3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 91189 | 0.66 | 0.72454 |
Target: 5'- -gGACGCgGCCGCCGCUcagaAUCGUC-UCg -3' miRNA: 3'- aaUUGCGgUGGUGGCGG----UGGCGGuGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 89865 | 0.76 | 0.223804 |
Target: 5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3' miRNA: 3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 87880 | 0.67 | 0.664687 |
Target: 5'- -cGACGCCuucuACCAUCGCCGCuCGau-CCg -3' miRNA: 3'- aaUUGCGG----UGGUGGCGGUG-GCgguGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 87603 | 0.75 | 0.286452 |
Target: 5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3' miRNA: 3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 84410 | 0.66 | 0.753531 |
Target: 5'- -aAACGUCGCCuCCuaCGCCGuCCAUg -3' miRNA: 3'- aaUUGCGGUGGuGGcgGUGGC-GGUGg -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 80716 | 0.66 | 0.734294 |
Target: 5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3' miRNA: 3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 78604 | 0.73 | 0.379815 |
Target: 5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3' miRNA: 3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 75688 | 0.66 | 0.762996 |
Target: 5'- --uACGCUcgaaAUCGgCGgCGCCGUCACCg -3' miRNA: 3'- aauUGCGG----UGGUgGCgGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 72543 | 0.86 | 0.049888 |
Target: 5'- ---uCGUUGCCGCCGCCGCCGCUACCa -3' miRNA: 3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 71475 | 0.8 | 0.12572 |
Target: 5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3' miRNA: 3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 67862 | 0.66 | 0.734294 |
Target: 5'- ---uCGCCAgCGCUGUUACCGUCuucagACCa -3' miRNA: 3'- aauuGCGGUgGUGGCGGUGGCGG-----UGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 66915 | 0.67 | 0.684832 |
Target: 5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3' miRNA: 3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 62176 | 0.73 | 0.355837 |
Target: 5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3' miRNA: 3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 60361 | 0.93 | 0.017305 |
Target: 5'- ---uCGCCGCCGCCGCCGCCGCUGCCu -3' miRNA: 3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 59348 | 0.81 | 0.119394 |
Target: 5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3' miRNA: 3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5' |
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11680 | 3' | -59 | NC_003102.1 | + | 59259 | 0.66 | 0.753531 |
Target: 5'- -aAGCGCCGUCGgCGCaCACaaagucgcaucUGCCACCa -3' miRNA: 3'- aaUUGCGGUGGUgGCG-GUG-----------GCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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