miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 97242 0.71 0.456996
Target:  5'- -aGACGUCcaaguguuucucgAUCGCCGCCaAUCGCUACCa -3'
miRNA:   3'- aaUUGCGG-------------UGGUGGCGG-UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5'
11680 3' -59 NC_003102.1 + 92262 0.76 0.240581
Target:  5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3'
miRNA:   3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 91389 0.68 0.614011
Target:  5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3'
miRNA:   3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 91189 0.66 0.72454
Target:  5'- -gGACGCgGCCGCCGCUcagaAUCGUC-UCg -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG----UGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 89865 0.76 0.223804
Target:  5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3'
miRNA:   3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 87880 0.67 0.664687
Target:  5'- -cGACGCCuucuACCAUCGCCGCuCGau-CCg -3'
miRNA:   3'- aaUUGCGG----UGGUGGCGGUG-GCgguGG- -5'
11680 3' -59 NC_003102.1 + 87603 0.75 0.286452
Target:  5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5'
11680 3' -59 NC_003102.1 + 84410 0.66 0.753531
Target:  5'- -aAACGUCGCCuCCuaCGCCGuCCAUg -3'
miRNA:   3'- aaUUGCGGUGGuGGcgGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 80716 0.66 0.734294
Target:  5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 78604 0.73 0.379815
Target:  5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3'
miRNA:   3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 75688 0.66 0.762996
Target:  5'- --uACGCUcgaaAUCGgCGgCGCCGUCACCg -3'
miRNA:   3'- aauUGCGG----UGGUgGCgGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 72543 0.86 0.049888
Target:  5'- ---uCGUUGCCGCCGCCGCCGCUACCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 71475 0.8 0.12572
Target:  5'- -cAACGUCACCGCCGUUGCCGCCuCUg -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 67862 0.66 0.734294
Target:  5'- ---uCGCCAgCGCUGUUACCGUCuucagACCa -3'
miRNA:   3'- aauuGCGGUgGUGGCGGUGGCGG-----UGG- -5'
11680 3' -59 NC_003102.1 + 66915 0.67 0.684832
Target:  5'- ---uCGUCGCCGCCGCagUCGUCAUCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGguGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 62176 0.73 0.355837
Target:  5'- -aAACGCCGauugaaaCACCcgaGCCGCCGCCucgACCg -3'
miRNA:   3'- aaUUGCGGUg------GUGG---CGGUGGCGG---UGG- -5'
11680 3' -59 NC_003102.1 + 60361 0.93 0.017305
Target:  5'- ---uCGCCGCCGCCGCCGCCGCUGCCu -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59348 0.81 0.119394
Target:  5'- ---cCGUUGCCGCCGUCGCCGUCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 59259 0.66 0.753531
Target:  5'- -aAGCGCCGUCGgCGCaCACaaagucgcaucUGCCACCa -3'
miRNA:   3'- aaUUGCGGUGGUgGCG-GUG-----------GCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.