miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 18305 0.73 0.371703
Target:  5'- -cGACGCCGacgaACCuGCCGCCGUCGCg -3'
miRNA:   3'- aaUUGCGGUgg--UGG-CGGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 78604 0.73 0.379815
Target:  5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3'
miRNA:   3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 29508 0.73 0.379815
Target:  5'- -aGACGgCA-CACCGCCAUUGCgGCCg -3'
miRNA:   3'- aaUUGCgGUgGUGGCGGUGGCGgUGG- -5'
11680 3' -59 NC_003102.1 + 40658 0.71 0.448806
Target:  5'- -aGACGUUACCGCCGCCG-CGUCAg- -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUgGCGGUgg -5'
11680 3' -59 NC_003102.1 + 97242 0.71 0.456996
Target:  5'- -aGACGUCcaaguguuucucgAUCGCCGCCaAUCGCUACCa -3'
miRNA:   3'- aaUUGCGG-------------UGGUGGCGG-UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 57889 0.71 0.46158
Target:  5'- -aAGCGCCACgGCCacguucGCCGagaggcuaaucgcguUCGCCGCCg -3'
miRNA:   3'- aaUUGCGGUGgUGG------CGGU---------------GGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 18199 0.71 0.467113
Target:  5'- -cGGCGCCGCCGuuuuggaaCGCgACCGCCAa- -3'
miRNA:   3'- aaUUGCGGUGGUg-------GCGgUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 105348 0.71 0.47641
Target:  5'- ---uCGUCGCCGCUGUUAUCGgCACCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 52481 0.71 0.485798
Target:  5'- --uGCGCCuaucggaCGCgGCCACCGCCAa- -3'
miRNA:   3'- aauUGCGGug-----GUGgCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 29321 0.69 0.553704
Target:  5'- aUAAcCGUCuCCuCCGCCAUCGCCuCCu -3'
miRNA:   3'- aAUU-GCGGuGGuGGCGGUGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 6729 0.69 0.563659
Target:  5'- gUUGGCGCUGCCGagGCUgauGCUGCCGCUg -3'
miRNA:   3'- -AAUUGCGGUGGUggCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 6834 0.69 0.573661
Target:  5'- -cAACGCCagcggcaacGCCAaCGCCAaCGUCACCa -3'
miRNA:   3'- aaUUGCGG---------UGGUgGCGGUgGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 23540 0.69 0.573661
Target:  5'- -gGACG-CGCCGCCuaCGcCCGCCACa -3'
miRNA:   3'- aaUUGCgGUGGUGGcgGU-GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 2468 0.69 0.593781
Target:  5'- gUUAAUGUCGCgACuCGUaaCACCGUCGCCc -3'
miRNA:   3'- -AAUUGCGGUGgUG-GCG--GUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 20340 0.68 0.607933
Target:  5'- -cGACGCCugaauuGCCAuccgagucagugccuUCGCCauaGCCGUCACCg -3'
miRNA:   3'- aaUUGCGG------UGGU---------------GGCGG---UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 91389 0.68 0.614011
Target:  5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3'
miRNA:   3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 133741 0.68 0.614011
Target:  5'- --cGCGUCGCaGCCGCCGuagugUCGCCGCa -3'
miRNA:   3'- aauUGCGGUGgUGGCGGU-----GGCGGUGg -5'
11680 3' -59 NC_003102.1 + 14950 0.68 0.618065
Target:  5'- ---cCGCUGCCGCCGCUcgaagacuugguuucGuuGCCGCUg -3'
miRNA:   3'- aauuGCGGUGGUGGCGG---------------UggCGGUGG- -5'
11680 3' -59 NC_003102.1 + 115137 0.68 0.623135
Target:  5'- cUGuCGCCGCCGuuGCCuuuggacACCGCCGu- -3'
miRNA:   3'- aAUuGCGGUGGUggCGG-------UGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 37880 0.68 0.624149
Target:  5'- --uGC-CCGCCACCGUCAUC-UCGCCg -3'
miRNA:   3'- aauUGcGGUGGUGGCGGUGGcGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.