miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11680 3' -59 NC_003102.1 + 78604 0.73 0.379815
Target:  5'- ---cCGUCGCCGucgUCGCCGCCGUCAUCu -3'
miRNA:   3'- aauuGCGGUGGU---GGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 80716 0.66 0.734294
Target:  5'- -cGAuCGUUGCUGCCGCUGCUGCUGCUc -3'
miRNA:   3'- aaUU-GCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 84410 0.66 0.753531
Target:  5'- -aAACGUCGCCuCCuaCGCCGuCCAUg -3'
miRNA:   3'- aaUUGCGGUGGuGGcgGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 87603 0.75 0.286452
Target:  5'- ---gUGCCACCGCCGUCGCCGacgucgaucgaucuuCCAUCa -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGC---------------GGUGG- -5'
11680 3' -59 NC_003102.1 + 87880 0.67 0.664687
Target:  5'- -cGACGCCuucuACCAUCGCCGCuCGau-CCg -3'
miRNA:   3'- aaUUGCGG----UGGUGGCGGUG-GCgguGG- -5'
11680 3' -59 NC_003102.1 + 89865 0.76 0.223804
Target:  5'- -cGACGCgAacgguuucuuCCGCCGCCGCCGCCAg- -3'
miRNA:   3'- aaUUGCGgU----------GGUGGCGGUGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 91189 0.66 0.72454
Target:  5'- -gGACGCgGCCGCCGCUcagaAUCGUC-UCg -3'
miRNA:   3'- aaUUGCGgUGGUGGCGG----UGGCGGuGG- -5'
11680 3' -59 NC_003102.1 + 91389 0.68 0.614011
Target:  5'- -cGACuccccCUACCACCGaCACCGgCGCCg -3'
miRNA:   3'- aaUUGc----GGUGGUGGCgGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 92262 0.76 0.240581
Target:  5'- ---uCGCCuccgacGCCGgCGCCGCCGUCACCu -3'
miRNA:   3'- aauuGCGG------UGGUgGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 92971 0.75 0.290458
Target:  5'- cUGACGCCGCCGCCGaUACCGUCu-- -3'
miRNA:   3'- aAUUGCGGUGGUGGCgGUGGCGGugg -5'
11680 3' -59 NC_003102.1 + 97242 0.71 0.456996
Target:  5'- -aGACGUCcaaguguuucucgAUCGCCGCCaAUCGCUACCa -3'
miRNA:   3'- aaUUGCGG-------------UGGUGGCGG-UGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 99960 0.66 0.762055
Target:  5'- -aAACGUugaaagguuugugCGCgACCGUCGCCGaCCACg -3'
miRNA:   3'- aaUUGCG-------------GUGgUGGCGGUGGC-GGUGg -5'
11680 3' -59 NC_003102.1 + 101871 1 0.005174
Target:  5'- ---cCGCCGCCACCGCCACCGCCGCCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 105348 0.71 0.47641
Target:  5'- ---uCGUCGCCGCUGUUAUCGgCACCg -3'
miRNA:   3'- aauuGCGGUGGUGGCGGUGGCgGUGG- -5'
11680 3' -59 NC_003102.1 + 111422 0.89 0.031515
Target:  5'- aUGACGCCGCCGCCGCCGCCuCCuCCg -3'
miRNA:   3'- aAUUGCGGUGGUGGCGGUGGcGGuGG- -5'
11680 3' -59 NC_003102.1 + 111568 0.83 0.080634
Target:  5'- -cGGCGUCAUCAUCGCCACCGCUaaACCa -3'
miRNA:   3'- aaUUGCGGUGGUGGCGGUGGCGG--UGG- -5'
11680 3' -59 NC_003102.1 + 113170 0.82 0.094437
Target:  5'- ---cCGCCACCGCCGacaccaCCACCGCCACg -3'
miRNA:   3'- aauuGCGGUGGUGGC------GGUGGCGGUGg -5'
11680 3' -59 NC_003102.1 + 115137 0.68 0.623135
Target:  5'- cUGuCGCCGCCGuuGCCuuuggacACCGCCGu- -3'
miRNA:   3'- aAUuGCGGUGGUggCGG-------UGGCGGUgg -5'
11680 3' -59 NC_003102.1 + 115165 1.1 0.001169
Target:  5'- uUUAACGCCACCACCGCCACCGCCACCg -3'
miRNA:   3'- -AAUUGCGGUGGUGGCGGUGGCGGUGG- -5'
11680 3' -59 NC_003102.1 + 118487 0.67 0.674776
Target:  5'- -gGGCGCCGUCGCaCGCCAucCCGuCUACUa -3'
miRNA:   3'- aaUUGCGGUGGUG-GCGGU--GGC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.