Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11682 | 3' | -43.5 | NC_003102.1 | + | 132544 | 0.78 | 0.947821 |
Target: 5'- uUUAUaAACAUGUUUAUGAAAAGUCUAa -3' miRNA: 3'- -AGUAcUUGUACAAGUGCUUUUCAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 133370 | 0.78 | 0.947821 |
Target: 5'- uUUAUGAACAUGUUCA-GAAAAGUUa- -3' miRNA: 3'- -AGUACUUGUACAAGUgCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 56047 | 0.77 | 0.968012 |
Target: 5'- cUCA--AACAUGUUUACGAAAAGUCa- -3' miRNA: 3'- -AGUacUUGUACAAGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 138031 | 0.77 | 0.968012 |
Target: 5'- uUUAUGAACAUGUUCAUGAAcauGUUUAu -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUuu-CAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 112819 | 0.77 | 0.971263 |
Target: 5'- -----cACAUGUUCACGAAAAGUCa- -3' miRNA: 3'- aguacuUGUACAAGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 55271 | 0.76 | 0.979587 |
Target: 5'- uUCAUGAACAUGUUCAUuAAAAaUCUAa -3' miRNA: 3'- -AGUACUUGUACAAGUGcUUUUcAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 26008 | 0.76 | 0.984041 |
Target: 5'- aCAUGuAACcUGUUUACGAAAAGUCg- -3' miRNA: 3'- aGUAC-UUGuACAAGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 137873 | 0.76 | 0.984041 |
Target: 5'- uUCAUGAACAUGUUCAUaAAcauGUCUAu -3' miRNA: 3'- -AGUACUUGUACAAGUGcUUuu-CAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 133149 | 0.75 | 0.987716 |
Target: 5'- aCAUGuuaauaAACAUGUUCACaAAAAGUCUAa -3' miRNA: 3'- aGUAC------UUGUACAAGUGcUUUUCAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 103495 | 0.75 | 0.989288 |
Target: 5'- uUCGUGcucaAACGUGUcCGCGAAAAGUCa- -3' miRNA: 3'- -AGUAC----UUGUACAaGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 54985 | 0.75 | 0.990699 |
Target: 5'- uUCAUGAACAUGUUUAUGAAcuuGUUa- -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 103559 | 0.74 | 0.99196 |
Target: 5'- cCAUcGACAUGUcCGCGAAAAGUCa- -3' miRNA: 3'- aGUAcUUGUACAaGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 54742 | 0.74 | 0.994074 |
Target: 5'- uUCGUGAACAUGUUUAUGAAcauguuAGaCCGu -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUu-----UCaGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 26307 | 0.74 | 0.994074 |
Target: 5'- gUCAUcGACAUGUUaACGAAAAGUCa- -3' miRNA: 3'- -AGUAcUUGUACAAgUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 132582 | 0.74 | 0.994074 |
Target: 5'- uUCGUGAACAUGUUUAUGAAcauguuAGaCCGu -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUu-----UCaGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 54729 | 0.74 | 0.994074 |
Target: 5'- ---aGAuCAUGUUCAUGAAAAGUCa- -3' miRNA: 3'- aguaCUuGUACAAGUGCUUUUCAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 133206 | 0.74 | 0.994949 |
Target: 5'- uUCA--AACAUGUUCACaAAAAGUCUAa -3' miRNA: 3'- -AGUacUUGUACAAGUGcUUUUCAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 132797 | 0.74 | 0.994949 |
Target: 5'- uUCGUGAACAUGUUUAUGAAcauGUUa- -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 55617 | 0.74 | 0.994949 |
Target: 5'- uUUAUaAACAUGUUCACaAAAAGUCUAa -3' miRNA: 3'- -AGUAcUUGUACAAGUGcUUUUCAGGU- -5' |
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11682 | 3' | -43.5 | NC_003102.1 | + | 132686 | 0.74 | 0.994949 |
Target: 5'- uUCGUGAACAUGUUUAUGAAccuGUUa- -3' miRNA: 3'- -AGUACUUGUACAAGUGCUUuu-CAGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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