miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11692 5' -46.2 NC_003102.1 + 137295 0.68 0.998209
Target:  5'- aAACgUGuCUGACUUUUCGUgGACAUGu -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104350 0.69 0.997396
Target:  5'- gAACCUGGCcGACUUUUUAgaUGACGc- -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUa-AUUGUac -5'
11692 5' -46.2 NC_003102.1 + 10815 0.69 0.996886
Target:  5'- uAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 61601 0.69 0.996296
Target:  5'- gAACCUGGCaGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 10650 0.69 0.996296
Target:  5'- aAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 26190 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 10574 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 121893 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUa------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 26267 0.69 0.995617
Target:  5'- gAACCUGGCcGACUUUUCGUg------ -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauuguac -5'
11692 5' -46.2 NC_003102.1 + 10732 0.7 0.993955
Target:  5'- gAACCUGGCcGACUUUUCGU--GC-UGa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUAauUGuAC- -5'
11692 5' -46.2 NC_003102.1 + 76352 0.7 0.992951
Target:  5'- gAACCUGGCcGACUUUUCGUaaauuuUAAUGUa -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUA------AUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 10518 0.7 0.992951
Target:  5'- gAACgUGuCUGACUUUUCGUaGACAUGg -3'
miRNA:   3'- -UUGgGCcGACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89508 0.71 0.989126
Target:  5'- gAACgUGGCUGACUUUUCGUagAAUcUGg -3'
miRNA:   3'- -UUGgGCCGACUGAAAAGUAa-UUGuAC- -5'
11692 5' -46.2 NC_003102.1 + 67308 0.71 0.989126
Target:  5'- gAACCUGGCcGACUUUUCGaUaagcgaucGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAAGUaA--------UUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26894 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUgAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 26765 0.71 0.987543
Target:  5'- --aCCGuaUGACUUUUCGUaAACAUGu -3'
miRNA:   3'- uugGGCcgACUGAAAAGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 89392 0.71 0.983849
Target:  5'- aAACuuGGCUGACUUUUgGaUAAUAUa -3'
miRNA:   3'- -UUGggCCGACUGAAAAgUaAUUGUAc -5'
11692 5' -46.2 NC_003102.1 + 55993 0.71 0.983849
Target:  5'- gAACCUGGCcGACUUUucaaaauaaaUCAUaAACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAA----------AGUAaUUGUAC- -5'
11692 5' -46.2 NC_003102.1 + 104287 0.72 0.981716
Target:  5'- uAACCUGGUUGACUUUUCGaUAAg--- -3'
miRNA:   3'- -UUGGGCCGACUGAAAAGUaAUUguac -5'
11692 5' -46.2 NC_003102.1 + 103539 0.72 0.981716
Target:  5'- aAACCUGGCcGACUUUUugacCAUcGACAUGu -3'
miRNA:   3'- -UUGGGCCGaCUGAAAA----GUAaUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.