miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11693 3' -50.2 NC_003102.1 + 45998 1.12 0.006644
Target:  5'- cGCCGCCAUCAACGACAUUGCCGUUAGu -3'
miRNA:   3'- -CGGCGGUAGUUGCUGUAACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 2380 0.75 0.753391
Target:  5'- uGCCGCCAUCAugGACGcccGCUuuGUUGa -3'
miRNA:   3'- -CGGCGGUAGUugCUGUaa-CGG--CAAUc -5'
11693 3' -50.2 NC_003102.1 + 108691 0.75 0.753391
Target:  5'- cGUCGCCGUUGGCGuCAUUcugaucgucGCCGUUGGc -3'
miRNA:   3'- -CGGCGGUAGUUGCuGUAA---------CGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 18492 0.72 0.899176
Target:  5'- gGgCGCCGUCGACGAUGUucgcgccaaucUGCCGg--- -3'
miRNA:   3'- -CgGCGGUAGUUGCUGUA-----------ACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 96257 0.7 0.939914
Target:  5'- uGCC-CCAUggaGGCGA-GUUGCCGUUGGa -3'
miRNA:   3'- -CGGcGGUAg--UUGCUgUAACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 81542 0.7 0.944695
Target:  5'- gGUCGCCGUCGcagACGACGc-GUCGUUGa -3'
miRNA:   3'- -CGGCGGUAGU---UGCUGUaaCGGCAAUc -5'
11693 3' -50.2 NC_003102.1 + 101887 0.7 0.953076
Target:  5'- cGCCGCCGcuucgauUCGAUGACGcUUGCUGc--- -3'
miRNA:   3'- -CGGCGGU-------AGUUGCUGU-AACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 41425 0.7 0.953492
Target:  5'- uUCGCCGUCAACGuuuuCGUcGCCGa--- -3'
miRNA:   3'- cGGCGGUAGUUGCu---GUAaCGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 70721 0.69 0.957515
Target:  5'- aGCUGaCCGUCGACGACGUguccaaGCUGa--- -3'
miRNA:   3'- -CGGC-GGUAGUUGCUGUAa-----CGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 93979 0.69 0.961293
Target:  5'- -aUGCUAUCGACGACuUUGuCCGgUAGa -3'
miRNA:   3'- cgGCGGUAGUUGCUGuAAC-GGCaAUC- -5'
11693 3' -50.2 NC_003102.1 + 23933 0.69 0.964832
Target:  5'- uGCCGCCAUCGAC-ACGUacaaucuaaUGUCGa--- -3'
miRNA:   3'- -CGGCGGUAGUUGcUGUA---------ACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 115141 0.69 0.968138
Target:  5'- aCCGCUGUCGcCGcCGUUGCCuUUGGa -3'
miRNA:   3'- cGGCGGUAGUuGCuGUAACGGcAAUC- -5'
11693 3' -50.2 NC_003102.1 + 29476 0.69 0.971216
Target:  5'- cGUCGCCAU--ACGGCAUguacaguuUGCCGUc-- -3'
miRNA:   3'- -CGGCGGUAguUGCUGUA--------ACGGCAauc -5'
11693 3' -50.2 NC_003102.1 + 75863 0.69 0.971216
Target:  5'- cGUCGUCGUCggUGACGgcGCCGc--- -3'
miRNA:   3'- -CGGCGGUAGuuGCUGUaaCGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 63006 0.69 0.971216
Target:  5'- aCCGUUAcaaaAACGACAUUGCCGa--- -3'
miRNA:   3'- cGGCGGUag--UUGCUGUAACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 23476 0.68 0.974075
Target:  5'- uGCCGCCcugAUCGACGuaacggGCCGUg-- -3'
miRNA:   3'- -CGGCGG---UAGUUGCuguaa-CGGCAauc -5'
11693 3' -50.2 NC_003102.1 + 121096 0.68 0.97893
Target:  5'- gGUCGCUcguugauGUCGGCGACGacGCCGUg-- -3'
miRNA:   3'- -CGGCGG-------UAGUUGCUGUaaCGGCAauc -5'
11693 3' -50.2 NC_003102.1 + 129117 0.68 0.981413
Target:  5'- aGCUGCCGgcggggUAGCGGCGgcgGCCGa--- -3'
miRNA:   3'- -CGGCGGUa-----GUUGCUGUaa-CGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 125969 0.68 0.981413
Target:  5'- -gUGCgCAUCGACGAU-UUGCCGUUu- -3'
miRNA:   3'- cgGCG-GUAGUUGCUGuAACGGCAAuc -5'
11693 3' -50.2 NC_003102.1 + 106065 0.68 0.981413
Target:  5'- uGCCGUCGUCAuCGACAaUGUCu---- -3'
miRNA:   3'- -CGGCGGUAGUuGCUGUaACGGcaauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.