miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11693 3' -50.2 NC_003102.1 + 2380 0.75 0.753391
Target:  5'- uGCCGCCAUCAugGACGcccGCUuuGUUGa -3'
miRNA:   3'- -CGGCGGUAGUugCUGUaa-CGG--CAAUc -5'
11693 3' -50.2 NC_003102.1 + 6719 0.66 0.995857
Target:  5'- uGCCGCCGguguUGGCGcUGCCGa--- -3'
miRNA:   3'- -CGGCGGUaguuGCUGUaACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 92000 0.66 0.995077
Target:  5'- cGCCGCCAaaacguagaaaacgaCAACGACGaaccggccacggUGCCGgUGGa -3'
miRNA:   3'- -CGGCGGUa--------------GUUGCUGUa-----------ACGGCaAUC- -5'
11693 3' -50.2 NC_003102.1 + 57126 0.66 0.994353
Target:  5'- uGUCGCCAUCAuCGAgacCGUUGuuGacuuUUAGa -3'
miRNA:   3'- -CGGCGGUAGUuGCU---GUAACggC----AAUC- -5'
11693 3' -50.2 NC_003102.1 + 34894 0.66 0.99345
Target:  5'- aUCGUCGaCGGCGACGUUGUCGc--- -3'
miRNA:   3'- cGGCGGUaGUUGCUGUAACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 63489 0.66 0.99345
Target:  5'- -gCGUCGUCuGCGGuCGUUGCUGUUcGGg -3'
miRNA:   3'- cgGCGGUAGuUGCU-GUAACGGCAA-UC- -5'
11693 3' -50.2 NC_003102.1 + 28389 0.66 0.99345
Target:  5'- -gCGCCAgu--CGGC--UGCCGUUGGg -3'
miRNA:   3'- cgGCGGUaguuGCUGuaACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 83643 0.66 0.99345
Target:  5'- cGCgCGCCAcuUUGGCGACAUgauacGCCuUUAGu -3'
miRNA:   3'- -CG-GCGGU--AGUUGCUGUAa----CGGcAAUC- -5'
11693 3' -50.2 NC_003102.1 + 2959 0.66 0.99345
Target:  5'- --gGCCAUCGGCGugAUUGCauacgaacUGUUGa -3'
miRNA:   3'- cggCGGUAGUUGCugUAACG--------GCAAUc -5'
11693 3' -50.2 NC_003102.1 + 110504 0.67 0.9913
Target:  5'- -aCGUuuCGUCAACGACGUgGCCGa--- -3'
miRNA:   3'- cgGCG--GUAGUUGCUGUAaCGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 121096 0.68 0.97893
Target:  5'- gGUCGCUcguugauGUCGGCGACGacGCCGUg-- -3'
miRNA:   3'- -CGGCGG-------UAGUUGCUGUaaCGGCAauc -5'
11693 3' -50.2 NC_003102.1 + 127777 0.67 0.9913
Target:  5'- cGCCGCCGUCGaacACGACAaUGauGa--- -3'
miRNA:   3'- -CGGCGGUAGU---UGCUGUaACggCaauc -5'
11693 3' -50.2 NC_003102.1 + 45998 1.12 0.006644
Target:  5'- cGCCGCCAUCAACGACAUUGCCGUUAGu -3'
miRNA:   3'- -CGGCGGUAGUUGCUGUAACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 108691 0.75 0.753391
Target:  5'- cGUCGCCGUUGGCGuCAUUcugaucgucGCCGUUGGc -3'
miRNA:   3'- -CGGCGGUAGUUGCuGUAA---------CGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 18492 0.72 0.899176
Target:  5'- gGgCGCCGUCGACGAUGUucgcgccaaucUGCCGg--- -3'
miRNA:   3'- -CgGCGGUAGUUGCUGUA-----------ACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 96257 0.7 0.939914
Target:  5'- uGCC-CCAUggaGGCGA-GUUGCCGUUGGa -3'
miRNA:   3'- -CGGcGGUAg--UUGCUgUAACGGCAAUC- -5'
11693 3' -50.2 NC_003102.1 + 101887 0.7 0.953076
Target:  5'- cGCCGCCGcuucgauUCGAUGACGcUUGCUGc--- -3'
miRNA:   3'- -CGGCGGU-------AGUUGCUGU-AACGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 41425 0.7 0.953492
Target:  5'- uUCGCCGUCAACGuuuuCGUcGCCGa--- -3'
miRNA:   3'- cGGCGGUAGUUGCu---GUAaCGGCaauc -5'
11693 3' -50.2 NC_003102.1 + 29476 0.69 0.971216
Target:  5'- cGUCGCCAU--ACGGCAUguacaguuUGCCGUc-- -3'
miRNA:   3'- -CGGCGGUAguUGCUGUA--------ACGGCAauc -5'
11693 3' -50.2 NC_003102.1 + 23476 0.68 0.974075
Target:  5'- uGCCGCCcugAUCGACGuaacggGCCGUg-- -3'
miRNA:   3'- -CGGCGG---UAGUUGCuguaa-CGGCAauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.