Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11693 | 3' | -50.2 | NC_003102.1 | + | 2380 | 0.75 | 0.753391 |
Target: 5'- uGCCGCCAUCAugGACGcccGCUuuGUUGa -3' miRNA: 3'- -CGGCGGUAGUugCUGUaa-CGG--CAAUc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 2959 | 0.66 | 0.99345 |
Target: 5'- --gGCCAUCGGCGugAUUGCauacgaacUGUUGa -3' miRNA: 3'- cggCGGUAGUUGCugUAACG--------GCAAUc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 6719 | 0.66 | 0.995857 |
Target: 5'- uGCCGCCGguguUGGCGcUGCCGa--- -3' miRNA: 3'- -CGGCGGUaguuGCUGUaACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 15260 | 0.66 | 0.994353 |
Target: 5'- gGCCGCCG--AAUGuuGUUGgCCGUUAa -3' miRNA: 3'- -CGGCGGUagUUGCugUAAC-GGCAAUc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 16901 | 0.68 | 0.983474 |
Target: 5'- cGCCGCUAgcg-UGACAUUGUCGgcGGc -3' miRNA: 3'- -CGGCGGUaguuGCUGUAACGGCaaUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 18492 | 0.72 | 0.899176 |
Target: 5'- gGgCGCCGUCGACGAUGUucgcgccaaucUGCCGg--- -3' miRNA: 3'- -CgGCGGUAGUUGCUGUA-----------ACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 23476 | 0.68 | 0.974075 |
Target: 5'- uGCCGCCcugAUCGACGuaacggGCCGUg-- -3' miRNA: 3'- -CGGCGG---UAGUUGCuguaa-CGGCAauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 23933 | 0.69 | 0.964832 |
Target: 5'- uGCCGCCAUCGAC-ACGUacaaucuaaUGUCGa--- -3' miRNA: 3'- -CGGCGGUAGUUGcUGUA---------ACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 28389 | 0.66 | 0.99345 |
Target: 5'- -gCGCCAgu--CGGC--UGCCGUUGGg -3' miRNA: 3'- cgGCGGUaguuGCUGuaACGGCAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 29476 | 0.69 | 0.971216 |
Target: 5'- cGUCGCCAU--ACGGCAUguacaguuUGCCGUc-- -3' miRNA: 3'- -CGGCGGUAguUGCUGUA--------ACGGCAauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 29673 | 0.68 | 0.983474 |
Target: 5'- aGUCGgCcgCAAUGGCGgugUGCCGUcUGGa -3' miRNA: 3'- -CGGCgGuaGUUGCUGUa--ACGGCA-AUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 31808 | 0.67 | 0.990034 |
Target: 5'- cCCGCUAUC-GCGGCGUacucuUGCCGc--- -3' miRNA: 3'- cGGCGGUAGuUGCUGUA-----ACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 32227 | 0.67 | 0.9913 |
Target: 5'- cGCCGacaaCGUCGAUG-CGUUGCCa---- -3' miRNA: 3'- -CGGCg---GUAGUUGCuGUAACGGcaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 34894 | 0.66 | 0.99345 |
Target: 5'- aUCGUCGaCGGCGACGUUGUCGc--- -3' miRNA: 3'- cGGCGGUaGUUGCUGUAACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 41425 | 0.7 | 0.953492 |
Target: 5'- uUCGCCGUCAACGuuuuCGUcGCCGa--- -3' miRNA: 3'- cGGCGGUAGUUGCu---GUAaCGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 45998 | 1.12 | 0.006644 |
Target: 5'- cGCCGCCAUCAACGACAUUGCCGUUAGu -3' miRNA: 3'- -CGGCGGUAGUUGCUGUAACGGCAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 47527 | 0.66 | 0.995857 |
Target: 5'- -aCGUCAUCGAauCGGCGUUcCCGUUGu -3' miRNA: 3'- cgGCGGUAGUU--GCUGUAAcGGCAAUc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 57126 | 0.66 | 0.994353 |
Target: 5'- uGUCGCCAUCAuCGAgacCGUUGuuGacuuUUAGa -3' miRNA: 3'- -CGGCGGUAGUuGCU---GUAACggC----AAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 63006 | 0.69 | 0.971216 |
Target: 5'- aCCGUUAcaaaAACGACAUUGCCGa--- -3' miRNA: 3'- cGGCGGUag--UUGCUGUAACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 63489 | 0.66 | 0.99345 |
Target: 5'- -gCGUCGUCuGCGGuCGUUGCUGUUcGGg -3' miRNA: 3'- cgGCGGUAGuUGCU-GUAACGGCAA-UC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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