Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11693 | 3' | -50.2 | NC_003102.1 | + | 129117 | 0.68 | 0.981413 |
Target: 5'- aGCUGCCGgcggggUAGCGGCGgcgGCCGa--- -3' miRNA: 3'- -CGGCGGUa-----GUUGCUGUaa-CGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 127777 | 0.67 | 0.9913 |
Target: 5'- cGCCGCCGUCGaacACGACAaUGauGa--- -3' miRNA: 3'- -CGGCGGUAGU---UGCUGUaACggCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 125969 | 0.68 | 0.981413 |
Target: 5'- -gUGCgCAUCGACGAU-UUGCCGUUu- -3' miRNA: 3'- cgGCG-GUAGUUGCUGuAACGGCAAuc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 121096 | 0.68 | 0.97893 |
Target: 5'- gGUCGCUcguugauGUCGGCGACGacGCCGUg-- -3' miRNA: 3'- -CGGCGG-------UAGUUGCUGUaaCGGCAauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 115141 | 0.69 | 0.968138 |
Target: 5'- aCCGCUGUCGcCGcCGUUGCCuUUGGa -3' miRNA: 3'- cGGCGGUAGUuGCuGUAACGGcAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 112514 | 0.67 | 0.9913 |
Target: 5'- uGCCGuCCAaaAGCGuguCGUUGCCGa--- -3' miRNA: 3'- -CGGC-GGUagUUGCu--GUAACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 110504 | 0.67 | 0.9913 |
Target: 5'- -aCGUuuCGUCAACGACGUgGCCGa--- -3' miRNA: 3'- cgGCG--GUAGUUGCUGUAaCGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 108691 | 0.75 | 0.753391 |
Target: 5'- cGUCGCCGUUGGCGuCAUUcugaucgucGCCGUUGGc -3' miRNA: 3'- -CGGCGGUAGUUGCuGUAA---------CGGCAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 106065 | 0.68 | 0.981413 |
Target: 5'- uGCCGUCGUCAuCGACAaUGUCu---- -3' miRNA: 3'- -CGGCGGUAGUuGCUGUaACGGcaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 102874 | 0.66 | 0.994353 |
Target: 5'- cGCCGUCGUCAuuguCGACGUcGUCa---- -3' miRNA: 3'- -CGGCGGUAGUu---GCUGUAaCGGcaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 101887 | 0.7 | 0.953076 |
Target: 5'- cGCCGCCGcuucgauUCGAUGACGcUUGCUGc--- -3' miRNA: 3'- -CGGCGGU-------AGUUGCUGU-AACGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 96257 | 0.7 | 0.939914 |
Target: 5'- uGCC-CCAUggaGGCGA-GUUGCCGUUGGa -3' miRNA: 3'- -CGGcGGUAg--UUGCUgUAACGGCAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 93979 | 0.69 | 0.961293 |
Target: 5'- -aUGCUAUCGACGACuUUGuCCGgUAGa -3' miRNA: 3'- cgGCGGUAGUUGCUGuAAC-GGCaAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 92000 | 0.66 | 0.995077 |
Target: 5'- cGCCGCCAaaacguagaaaacgaCAACGACGaaccggccacggUGCCGgUGGa -3' miRNA: 3'- -CGGCGGUa--------------GUUGCUGUa-----------ACGGCaAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 83643 | 0.66 | 0.99345 |
Target: 5'- cGCgCGCCAcuUUGGCGACAUgauacGCCuUUAGu -3' miRNA: 3'- -CG-GCGGU--AGUUGCUGUAa----CGGcAAUC- -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 81542 | 0.7 | 0.944695 |
Target: 5'- gGUCGCCGUCGcagACGACGc-GUCGUUGa -3' miRNA: 3'- -CGGCGGUAGU---UGCUGUaaCGGCAAUc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 75863 | 0.69 | 0.971216 |
Target: 5'- cGUCGUCGUCggUGACGgcGCCGc--- -3' miRNA: 3'- -CGGCGGUAGuuGCUGUaaCGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 71904 | 0.67 | 0.9913 |
Target: 5'- gGUCGCCGUCGGCGACAagGacagCGg--- -3' miRNA: 3'- -CGGCGGUAGUUGCUGUaaCg---GCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 70721 | 0.69 | 0.957515 |
Target: 5'- aGCUGaCCGUCGACGACGUguccaaGCUGa--- -3' miRNA: 3'- -CGGC-GGUAGUUGCUGUAa-----CGGCaauc -5' |
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11693 | 3' | -50.2 | NC_003102.1 | + | 63489 | 0.66 | 0.99345 |
Target: 5'- -gCGUCGUCuGCGGuCGUUGCUGUUcGGg -3' miRNA: 3'- cgGCGGUAGuUGCU-GUAACGGCAA-UC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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