Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11699 | 3' | -44.4 | NC_003102.1 | + | 132780 | 0.8 | 0.87212 |
Target: 5'- aUGAACcUGUuaGACUUUUCGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 132844 | 0.8 | 0.87212 |
Target: 5'- aUGAACaUGUuaGACUUUUCGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 132701 | 0.8 | 0.87212 |
Target: 5'- aUGAACcUGUuaGACUUUUCGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 76351 | 0.79 | 0.894792 |
Target: 5'- cGAACcUGgCCGACUUUUCGUAAAUUu -3' miRNA: 3'- aCUUGcACaGGCUGAAAAGCAUUUGA- -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 54450 | 0.79 | 0.901815 |
Target: 5'- uUGAACGUGUCCGACUUUUg------- -3' miRNA: 3'- -ACUUGCACAGGCUGAAAAgcauuuga -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 67077 | 0.79 | 0.908562 |
Target: 5'- -aAACGUGUCUGACUUUUUGcAAACa -3' miRNA: 3'- acUUGCACAGGCUGAAAAGCaUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 89257 | 0.78 | 0.92713 |
Target: 5'- uUGAACaUGUCUGACUUUUCaUAGACa -3' miRNA: 3'- -ACUUGcACAGGCUGAAAAGcAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 10575 | 0.76 | 0.964396 |
Target: 5'- cGAACcUGgCCGACUUUUCGUGAGg- -3' miRNA: 3'- aCUUGcACaGGCUGAAAAGCAUUUga -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 103612 | 0.76 | 0.967859 |
Target: 5'- -uAACGUGUCUGACUUUUCGa----- -3' miRNA: 3'- acUUGCACAGGCUGAAAAGCauuuga -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 104515 | 0.76 | 0.971076 |
Target: 5'- cGAACcUGgCCGACUUUUCGUuGACa -3' miRNA: 3'- aCUUGcACaGGCUGAAAAGCAuUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 112568 | 0.76 | 0.971076 |
Target: 5'- cGAACcUGgCCGACUUUUCGUuGACa -3' miRNA: 3'- aCUUGcACaGGCUGAAAAGCAuUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 36232 | 0.76 | 0.971076 |
Target: 5'- uUGAACGUGgCCGACUUUUCaUGuACa -3' miRNA: 3'- -ACUUGCACaGGCUGAAAAGcAUuUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 20170 | 0.75 | 0.97654 |
Target: 5'- cGAGCccGUGUCCGAUUUUgacgagaucacgcUCGUGGGCg -3' miRNA: 3'- aCUUG--CACAGGCUGAAA-------------AGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 42761 | 0.75 | 0.976805 |
Target: 5'- uUGAACGcGUCUGACUUUUCGa----- -3' miRNA: 3'- -ACUUGCaCAGGCUGAAAAGCauuuga -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 42896 | 0.75 | 0.976805 |
Target: 5'- cGAACcUGgCCGACUUUUUGUGAAUa -3' miRNA: 3'- aCUUGcACaGGCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 54892 | 0.75 | 0.979334 |
Target: 5'- aUGAACaUGUuaGACUUUUUGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 55411 | 0.75 | 0.979334 |
Target: 5'- aUGAACuUGUuaGACUUUUUGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 54861 | 0.75 | 0.979334 |
Target: 5'- aUGAACaUGUuaGACUUUUUGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 54829 | 0.75 | 0.979334 |
Target: 5'- aUGAACaUGUuaGACUUUUUGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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11699 | 3' | -44.4 | NC_003102.1 | + | 55128 | 0.75 | 0.979334 |
Target: 5'- aUGAACuUGUuaGACUUUUUGUGAACa -3' miRNA: 3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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