miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 5' -47.3 NC_003102.1 + 112816 0.84 0.437098
Target:  5'- aUGuu-CACGAAAAGUCAGACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26738 0.69 0.994382
Target:  5'- ----cCACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 121843 0.71 0.97577
Target:  5'- --uGACuACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 67148 0.73 0.930806
Target:  5'- aGAGuaguuaACGAAAAGUCAGACAcGUUUg -3'
miRNA:   3'- aCUCug----UGCUUUUCAGUCUGUcCAAA- -5'
11699 5' -47.3 NC_003102.1 + 103711 0.68 0.99758
Target:  5'- -cGGACAUGucgauggucaAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- acUCUGUGC----------UUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 112049 0.67 0.998631
Target:  5'- aGAGACAUGuuuauuGG-UAGACAGGUc- -3'
miRNA:   3'- aCUCUGUGCuuu---UCaGUCUGUCCAaa -5'
11699 5' -47.3 NC_003102.1 + 67228 0.72 0.963037
Target:  5'- cGAuGACuuauuACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCU-CUG-----UGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 25798 0.78 0.747572
Target:  5'- uUGAGuauugauCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUCu------GUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 89323 0.72 0.955176
Target:  5'- ----cCACGAAAAGUCGGcCGGGUUUg -3'
miRNA:   3'- acucuGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 25944 0.73 0.946253
Target:  5'- uUGAGACA--AAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUCUGUgcUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 121646 0.73 0.941382
Target:  5'- cGAuGACuuauCGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCU-CUGu---GCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26012 0.77 0.795261
Target:  5'- aGAGuuaaaguggcuuaaGCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCUC--------------UGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 103507 0.69 0.992394
Target:  5'- cGuGucCGCGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- aCuCu-GUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 104323 0.69 0.994382
Target:  5'- ----cCACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 89412 0.68 0.995205
Target:  5'- ---aACAUGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucUGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 25885 0.77 0.778391
Target:  5'- uUGAu-CACGAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- -ACUcuGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 132034 0.66 0.999629
Target:  5'- -----aACGAAAAGUCAGACAaGUUa -3'
miRNA:   3'- acucugUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 103626 0.67 0.997988
Target:  5'- aUGuu-CACGAAAAGUCGGACGcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 55963 0.66 0.999412
Target:  5'- aUGu--UACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 56054 0.67 0.999091
Target:  5'- aUGuu-UACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUcCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.