Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11699 | 5' | -47.3 | NC_003102.1 | + | 98037 | 0.66 | 0.999629 |
Target: 5'- ----uCAUGAAAAGUCAGACAaGUUg -3' miRNA: 3'- acucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 121843 | 0.71 | 0.97577 |
Target: 5'- --uGACuACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26137 | 0.73 | 0.941382 |
Target: 5'- --cGACuACGAAAAGUCAGACAaGUUa -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 112816 | 0.84 | 0.437098 |
Target: 5'- aUGuu-CACGAAAAGUCAGACAGGUUc -3' miRNA: 3'- -ACucuGUGCUUUUCAGUCUGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 132866 | 0.66 | 0.999531 |
Target: 5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3' miRNA: 3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 132946 | 0.66 | 0.999531 |
Target: 5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3' miRNA: 3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 112640 | 0.67 | 0.999091 |
Target: 5'- -aAGAUuauuuuAUGAAAAGUCAGcCAGGUUc -3' miRNA: 3'- acUCUG------UGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 118421 | 0.67 | 0.998881 |
Target: 5'- cGuGugGCaGAccGUCAGGCAGGUg- -3' miRNA: 3'- aCuCugUGcUUuuCAGUCUGUCCAaa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 103711 | 0.68 | 0.99758 |
Target: 5'- -cGGACAUGucgauggucaAAAAGUCGGcCAGGUUUg -3' miRNA: 3'- acUCUGUGC----------UUUUCAGUCuGUCCAAA- -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 9570 | 0.7 | 0.982958 |
Target: 5'- uUGAGACACGuuucGAGUCGGGCGaucGUUg -3' miRNA: 3'- -ACUCUGUGCuu--UUCAGUCUGUc--CAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 112746 | 0.68 | 0.995506 |
Target: 5'- -uGGACuaauuuaacaugucaACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acUCUG---------------UGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 104692 | 0.68 | 0.99758 |
Target: 5'- aGuAGAUcuaaacaugucaACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- aC-UCUG------------UGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 104454 | 0.66 | 0.999629 |
Target: 5'- cGAuGGCuuauCGAAAAGUCAacCAGGUUa -3' miRNA: 3'- aCU-CUGu---GCUUUUCAGUcuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26738 | 0.69 | 0.994382 |
Target: 5'- ----cCACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 26302 | 0.66 | 0.999531 |
Target: 5'- --cGACauguuaACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acuCUG------UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 76637 | 0.67 | 0.998631 |
Target: 5'- -----aACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acucugUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 76511 | 0.69 | 0.994382 |
Target: 5'- ----uUACGAAAAGUCGGcCAGGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCuGUCCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10762 | 0.72 | 0.966584 |
Target: 5'- --cGACuACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acuCUG-UGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 10677 | 0.66 | 0.999531 |
Target: 5'- ----cUACGAAAAGUCAGACAcGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGUCUGUcCAAa -5' |
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11699 | 5' | -47.3 | NC_003102.1 | + | 137219 | 0.66 | 0.999412 |
Target: 5'- ----uUAUGAAAAGUCcGACAGGUUc -3' miRNA: 3'- acucuGUGCUUUUCAGuCUGUCCAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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