miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 61628 0.73 0.934174
Target:  5'- ---uUGAAacAAGUCAGACGCGUUCGAAu -3'
miRNA:   3'- aggcGCUU--UUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55947 0.72 0.95755
Target:  5'- --aGCGAAAcGUCAGACAaGUUCAAu -3'
miRNA:   3'- aggCGCUUUuCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 59298 0.69 0.993888
Target:  5'- aUUGCGucguAAAAGUUuuuGACACGUUCGAAu -3'
miRNA:   3'- aGGCGC----UUUUCAGu--CUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 118011 0.67 0.997755
Target:  5'- --aGUGGAcAAGUCGGACACGaUCAu- -3'
miRNA:   3'- aggCGCUU-UUCAGUCUGUGCaAGUuu -5'
11701 5' -47.6 NC_003102.1 + 26081 0.85 0.39951
Target:  5'- -aCGCGucuacaAAAAGUCAGACACGUUCAGAu -3'
miRNA:   3'- agGCGC------UUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67239 0.79 0.692096
Target:  5'- gUuuGCaAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 91909 0.71 0.968441
Target:  5'- gUCGCGAAGcgguucGUguGACACGUUCAc- -3'
miRNA:   3'- aGGCGCUUUu-----CAguCUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 63272 0.67 0.997755
Target:  5'- gUCCaGCGAAcucGAGUUuGACACGaUCGAu -3'
miRNA:   3'- -AGG-CGCUU---UUCAGuCUGUGCaAGUUu -5'
11701 5' -47.6 NC_003102.1 + 67138 0.78 0.724316
Target:  5'- ---aCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26222 0.67 0.997755
Target:  5'- cCCGacuaCGAAAAGUCAGACAag-UUAGAa -3'
miRNA:   3'- aGGC----GCUUUUCAGUCUGUgcaAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 121926 0.72 0.965059
Target:  5'- -aCGCguuuauGAAAAGUCAaACACGUUCAAAu -3'
miRNA:   3'- agGCG------CUUUUCAGUcUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 21247 0.73 0.928682
Target:  5'- uUCC-CGAAAAGUUuaaAGGCACGUUUAAc -3'
miRNA:   3'- -AGGcGCUUUUCAG---UCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137402 0.71 0.971583
Target:  5'- aCgGCuauGAAAAGUCGGcCGCGUUCGAu -3'
miRNA:   3'- aGgCG---CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89515 0.71 0.971583
Target:  5'- aCUGUuuGAcaaAAAGUUGGACGCGUUCAAAu -3'
miRNA:   3'- aGGCG--CU---UUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104677 0.68 0.995535
Target:  5'- gUCaaCGAAAAGUCGGcCAgGUUCGAAa -3'
miRNA:   3'- -AGgcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55913 0.68 0.997217
Target:  5'- gUUCGUGAAAAGUCuaacaaguucauGAaCAUGUUCAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGu-----------CU-GUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67427 0.85 0.39951
Target:  5'- gUuuGCaAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26292 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 89421 0.83 0.466733
Target:  5'- gUCUaUGAAAAGUCAGACAUGUUCAAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 112814 0.8 0.626384
Target:  5'- gUUCaCGAAAAGUCAGACAgGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUgCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.