miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11853 5' -60.8 NC_003266.2 + 7465 0.66 0.336284
Target:  5'- -aACugC-CCCa-CGUcaAGGGCCGCCCg -3'
miRNA:   3'- cgUGugGaGGGacGCG--UUCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 9135 0.66 0.32825
Target:  5'- cGCGCACCUC---GCGCucgAAGGCU-CCCg -3'
miRNA:   3'- -CGUGUGGAGggaCGCG---UUCCGGcGGG- -5'
11853 5' -60.8 NC_003266.2 + 4265 0.66 0.323498
Target:  5'- uGCAUcCCUCCCaGCucaacagguuuGUAaacaccuacaccaaaGGGCUGCCCg -3'
miRNA:   3'- -CGUGuGGAGGGaCG-----------CGU---------------UCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 9753 0.66 0.320359
Target:  5'- cGgGCACCUCCUccucgccCGCGcGGCCGUgCa -3'
miRNA:   3'- -CgUGUGGAGGGac-----GCGUuCCGGCGgG- -5'
11853 5' -60.8 NC_003266.2 + 16860 0.66 0.31261
Target:  5'- cCGCGCCguaCUUGCGCcgggguuuucgGGGcGCCGCCg -3'
miRNA:   3'- cGUGUGGag-GGACGCG-----------UUC-CGGCGGg -5'
11853 5' -60.8 NC_003266.2 + 16475 0.66 0.31261
Target:  5'- -aGC-CCgugaCCCUGCaGCAGGuGCUGCCg -3'
miRNA:   3'- cgUGuGGa---GGGACG-CGUUC-CGGCGGg -5'
11853 5' -60.8 NC_003266.2 + 11162 0.67 0.290222
Target:  5'- aGCAC-CCUCUuuCUGUcC-AGGCCGCgCCg -3'
miRNA:   3'- -CGUGuGGAGG--GACGcGuUCCGGCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 3280 0.67 0.290222
Target:  5'- gGCAUGCUUCCCUcCGCAcucgcAGGCuCGacaCCu -3'
miRNA:   3'- -CGUGUGGAGGGAcGCGU-----UCCG-GCg--GG- -5'
11853 5' -60.8 NC_003266.2 + 8167 0.67 0.273923
Target:  5'- cGCGCcgaggucuggaccuGCCUCCC-GCGCG-GGCuCGUCa -3'
miRNA:   3'- -CGUG--------------UGGAGGGaCGCGUuCCG-GCGGg -5'
11853 5' -60.8 NC_003266.2 + 9192 0.67 0.262354
Target:  5'- ---aGCCUUCgaGCGCGAGGUgCGCgCCa -3'
miRNA:   3'- cgugUGGAGGgaCGCGUUCCG-GCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 6410 0.67 0.258366
Target:  5'- uGCugGaCC-CCCUgccccccuucugcucGCGCAAgggcGGCCGCCUc -3'
miRNA:   3'- -CGugU-GGaGGGA---------------CGCGUU----CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 6293 0.67 0.258366
Target:  5'- gGC-CACCUCgCC-GCGCAggggcucguugguccAgcagaggcGGCCGCCCu -3'
miRNA:   3'- -CGuGUGGAG-GGaCGCGU---------------U--------CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 23284 0.68 0.245432
Target:  5'- aGCGCACC-CCCgaucGCGgAAGGggcucugccagccacCCGCCg -3'
miRNA:   3'- -CGUGUGGaGGGa---CGCgUUCC---------------GGCGGg -5'
11853 5' -60.8 NC_003266.2 + 11104 0.68 0.236701
Target:  5'- cGCGCAUCUCCUcGgGCuccucGCCGCUCc -3'
miRNA:   3'- -CGUGUGGAGGGaCgCGuuc--CGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 15683 0.68 0.234864
Target:  5'- cGCGCGCCgguacgCCC-GCGcCAAGaGCCggcggcggcgcaucGCCCg -3'
miRNA:   3'- -CGUGUGGa-----GGGaCGC-GUUC-CGG--------------CGGG- -5'
11853 5' -60.8 NC_003266.2 + 15519 0.68 0.230625
Target:  5'- cGCGgGCaCUUCC-GCGCucccuGGGgCGCCCu -3'
miRNA:   3'- -CGUgUG-GAGGGaCGCGu----UCCgGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 30237 0.68 0.218867
Target:  5'- uUAgACCUCCCUccaccugaaGCgGCuccGGCUGCCCg -3'
miRNA:   3'- cGUgUGGAGGGA---------CG-CGuu-CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 20959 0.69 0.191701
Target:  5'- aGUGCACCagCCCcaccgcgGCGUcauuGAGGCCGUCUa -3'
miRNA:   3'- -CGUGUGGa-GGGa------CGCG----UUCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 13552 0.69 0.186636
Target:  5'- gGC-CACCagCCgGgGCAGuGCCGCCCg -3'
miRNA:   3'- -CGuGUGGagGGaCgCGUUcCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 20668 0.7 0.181689
Target:  5'- -gAUACCUcgcgCCCacuaUGCGcCAGGGCCaGCCCu -3'
miRNA:   3'- cgUGUGGA----GGG----ACGC-GUUCCGG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.