miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11854 5' -63.3 NC_003266.2 + 16575 0.66 0.249079
Target:  5'- cGCCcucGcGCUUcaaGCCC-CGaCGCGGCGCCg -3'
miRNA:   3'- -UGGu--CuUGGA---CGGGcGC-GCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 6462 0.66 0.24845
Target:  5'- uCCAGAgaaGCUUGCCauuCGCGCacggccaGCGcGCGCUc -3'
miRNA:   3'- uGGUCU---UGGACGG---GCGCG-------CGC-CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 20956 0.66 0.242845
Target:  5'- uCCAGugcACCaGCCCcacCGCGGCGUCa -3'
miRNA:   3'- uGGUCu--UGGaCGGGcgcGCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 13292 0.66 0.230765
Target:  5'- cGCaCGGGugCUG-CCGCa-GCGGUGCCc -3'
miRNA:   3'- -UG-GUCUugGACgGGCGcgCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 6363 0.66 0.224917
Target:  5'- uGCUGGAccaACgaGCCCcUGCGCGGCgaggugGCCa -3'
miRNA:   3'- -UGGUCU---UGgaCGGGcGCGCGCCG------CGG- -5'
11854 5' -63.3 NC_003266.2 + 16341 0.66 0.224917
Target:  5'- uGCCGGAccGCUcGCCagGCGCgaaaaccaccGUGGUGCCg -3'
miRNA:   3'- -UGGUCU--UGGaCGGg-CGCG----------CGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 9236 0.66 0.224917
Target:  5'- --gGGGGCCUGCgUCGcCG-GCGGCGCa -3'
miRNA:   3'- uggUCUUGGACG-GGC-GCgCGCCGCGg -5'
11854 5' -63.3 NC_003266.2 + 7191 0.66 0.219196
Target:  5'- cCCAGAGCUggaaGUCCGUGCGCuucuuguaGGCGg- -3'
miRNA:   3'- uGGUCUUGGa---CGGGCGCGCG--------CCGCgg -5'
11854 5' -63.3 NC_003266.2 + 3641 0.66 0.219196
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaCG-GGCGCGCGCCg---CGG- -5'
11854 5' -63.3 NC_003266.2 + 12609 0.67 0.215823
Target:  5'- gACCGcgcgacggugucGAGCCUGCUgacgccgaacuCGCGCcugcugcugcugcugGUGGCGCCc -3'
miRNA:   3'- -UGGU------------CUUGGACGG-----------GCGCG---------------CGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 15402 0.67 0.213599
Target:  5'- cCCAGGGCCuUGUagaCGUaggggcagGUGCGGCGUCu -3'
miRNA:   3'- uGGUCUUGG-ACGg--GCG--------CGCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 8479 0.67 0.208126
Target:  5'- uCCcGAGCCgccccuaccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- uGGuCUUGGa--------CGGG-CGCGCGCc---GCGG- -5'
11854 5' -63.3 NC_003266.2 + 12221 0.67 0.208126
Target:  5'- gGCCGGGcugguguacaacGCaCUGCUggaGCGCGUGGC-CCg -3'
miRNA:   3'- -UGGUCU------------UG-GACGGg--CGCGCGCCGcGG- -5'
11854 5' -63.3 NC_003266.2 + 24854 0.67 0.208126
Target:  5'- uGCCGGccACCUGCuCCGCGCuGCccucggacuucGUGCCg -3'
miRNA:   3'- -UGGUCu-UGGACG-GGCGCG-CGc----------CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 11339 0.67 0.197542
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAcGGGCGCGCGC--------CGCGg -5'
11854 5' -63.3 NC_003266.2 + 11960 0.67 0.192428
Target:  5'- aGCCAccuCCUGaucCCCaauGCGgGCGGCGCUg -3'
miRNA:   3'- -UGGUcuuGGAC---GGG---CGCgCGCCGCGG- -5'
11854 5' -63.3 NC_003266.2 + 6410 0.68 0.182548
Target:  5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGcCGCCu -3'
miRNA:   3'- -UGGUCUu--GGACGGG-----------CGCG----CGCC-GCGG- -5'
11854 5' -63.3 NC_003266.2 + 16292 0.68 0.182548
Target:  5'- cACCGGAcgcACUUuccGCCCGCGCcacuGCacGCGCCu -3'
miRNA:   3'- -UGGUCU---UGGA---CGGGCGCG----CGc-CGCGG- -5'
11854 5' -63.3 NC_003266.2 + 21395 0.68 0.182548
Target:  5'- cCCAG-ACCgugcaggGUCCGCGUuCGGcCGCCu -3'
miRNA:   3'- uGGUCuUGGa------CGGGCGCGcGCC-GCGG- -5'
11854 5' -63.3 NC_003266.2 + 9423 0.68 0.177778
Target:  5'- cCCGGGccACCUGgagaUGCGCgGCGGCGUCu -3'
miRNA:   3'- uGGUCU--UGGACgg--GCGCG-CGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.