Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 12699 | 0.72 | 0.434432 |
Target: 5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3' miRNA: 3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 16543 | 0.73 | 0.347875 |
Target: 5'- gCGCU-CGGCAGCACCuGC-UGCAGGg -3' miRNA: 3'- -GCGAuGUUGUCGUGGuUGcACGUCUg -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 13348 | 0.84 | 0.068962 |
Target: 5'- cCGCUGCGGCAGCACC--CGUGCGGcCg -3' miRNA: 3'- -GCGAUGUUGUCGUGGuuGCACGUCuG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 18063 | 0.68 | 0.636815 |
Target: 5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3' miRNA: 3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 24218 | 0.68 | 0.622714 |
Target: 5'- gCGCUugAugAGCACCugauccauaacCGUGCucauGACu -3' miRNA: 3'- -GCGAugUugUCGUGGuu---------GCACGu---CUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 8082 | 0.69 | 0.566638 |
Target: 5'- aCG-UAguACAGCACCAGa-UGCAGGCg -3' miRNA: 3'- -GCgAUguUGUCGUGGUUgcACGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 18222 | 0.67 | 0.718226 |
Target: 5'- -----gGACAGCAgCGGCG-GCGGACa -3' miRNA: 3'- gcgaugUUGUCGUgGUUGCaCGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 20124 | 0.67 | 0.718226 |
Target: 5'- uCGUUGC-GCAGCaugGCCucaAGCGUGgAGGCg -3' miRNA: 3'- -GCGAUGuUGUCG---UGG---UUGCACgUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 22179 | 0.68 | 0.636815 |
Target: 5'- gGCUGCGugccCACCAugGgccgGCAGACc -3' miRNA: 3'- gCGAUGUugucGUGGUugCa---CGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 8522 | 0.7 | 0.543619 |
Target: 5'- cCGCgc--GCGGCGCCGACGUGCc--- -3' miRNA: 3'- -GCGauguUGUCGUGGUUGCACGucug -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 25116 | 0.72 | 0.434432 |
Target: 5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3' miRNA: 3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 25067 | 0.66 | 0.751931 |
Target: 5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3' miRNA: 3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 16926 | 0.7 | 0.520916 |
Target: 5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3' miRNA: 3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 22400 | 0.67 | 0.67199 |
Target: 5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3' miRNA: 3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 16616 | 0.66 | 0.762906 |
Target: 5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3' miRNA: 3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 3687 | 0.73 | 0.366012 |
Target: 5'- gCGCUggcggcagaaGCAGCAGCugCGGCG-GCAGcuGCg -3' miRNA: 3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 22032 | 0.66 | 0.751931 |
Target: 5'- aCGCU-CGcCAGCACCGuaGCGUcGguGAUc -3' miRNA: 3'- -GCGAuGUuGUCGUGGU--UGCA-CguCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 13861 | 0.66 | 0.729577 |
Target: 5'- gGCaaugGCGGCGGCGgCGGCGaUGCAGcCc -3' miRNA: 3'- gCGa---UGUUGUCGUgGUUGC-ACGUCuG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 8466 | 0.66 | 0.729577 |
Target: 5'- gGC-ACGuCGGCGCCG-CGcGCGGGCa -3' miRNA: 3'- gCGaUGUuGUCGUGGUuGCaCGUCUG- -5' |
|||||||
11882 | 5' | -51.8 | NC_003266.2 | + | 23657 | 0.67 | 0.695248 |
Target: 5'- gCGCUGCuuGACcGCACCGAgGUGCc--- -3' miRNA: 3'- -GCGAUG--UUGuCGUGGUUgCACGucug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home