Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 31580 | 0.66 | 0.216643 |
Target: 5'- uGCAGCCCGCCGGgGccUGCaguaCCagagcugggaagaGGGGa -3' miRNA: 3'- gCGUCGGGCGGUUgC--ACGg---GG-------------CCCCg -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 11519 | 0.66 | 0.215539 |
Target: 5'- uGCAGaauauucaccagguCCagaaGCCAGCG-GCCCUcGGGCu -3' miRNA: 3'- gCGUC--------------GGg---CGGUUGCaCGGGGcCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 21873 | 0.66 | 0.213891 |
Target: 5'- aGUGGCUgGCCAaguaccaguuccgcaACGUGUcccugCCCGcGGGCc -3' miRNA: 3'- gCGUCGGgCGGU---------------UGCACG-----GGGC-CCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 6334 | 0.66 | 0.208476 |
Target: 5'- gGUGGCCa-CCAGCGUugaccucaucacccuGCauaaCCGGGGCu -3' miRNA: 3'- gCGUCGGgcGGUUGCA---------------CGg---GGCCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 3625 | 0.66 | 0.206344 |
Target: 5'- cCGCAGCugcugcuucugCCGCCAGCGccgugcgcggaaUGgCCauGGGCg -3' miRNA: 3'- -GCGUCG-----------GGCGGUUGC------------ACgGGgcCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 13593 | 0.66 | 0.206344 |
Target: 5'- gGUGGCCC-CCuGCGUugCCCGGGGa -3' miRNA: 3'- gCGUCGGGcGGuUGCAcgGGGCCCCg -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 17003 | 0.66 | 0.206344 |
Target: 5'- cCGCGGCCgcgCGCCucuGACccUGCCgCGGGcGCg -3' miRNA: 3'- -GCGUCGG---GCGG---UUGc-ACGGgGCCC-CG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 33379 | 0.66 | 0.201614 |
Target: 5'- aGCAGCuuGacggagcggcgcagaCAGCGacUGCUgCGGGGCc -3' miRNA: 3'- gCGUCGggCg--------------GUUGC--ACGGgGCCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 10709 | 0.66 | 0.195962 |
Target: 5'- gGCAGCCaCGCCcuCGUuaGCCgCGGaauucGGCc -3' miRNA: 3'- gCGUCGG-GCGGuuGCA--CGGgGCC-----CCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 8639 | 0.66 | 0.190449 |
Target: 5'- gGCGGCCUGCCGcagaaucucuugcACGUcgcccgaguuGUCCUGGuaGGCa -3' miRNA: 3'- gCGUCGGGCGGU-------------UGCA----------CGGGGCC--CCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 15597 | 0.67 | 0.18604 |
Target: 5'- aCGCGGCCCuUgAGgGcGCCCCaGGGaGCg -3' miRNA: 3'- -GCGUCGGGcGgUUgCaCGGGG-CCC-CG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 4063 | 0.67 | 0.181247 |
Target: 5'- gGUAGCUCcauugcaggGCCu-CGUGCUCgGGGGUg -3' miRNA: 3'- gCGUCGGG---------CGGuuGCACGGGgCCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 10099 | 0.67 | 0.181247 |
Target: 5'- aGCGGCCauCGCUcgguGGCGgggGCgCCGGGcGCu -3' miRNA: 3'- gCGUCGG--GCGG----UUGCa--CGgGGCCC-CG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 15698 | 0.67 | 0.181247 |
Target: 5'- cCGC-GCCaagaGCCGGCGgcgGCgcaucgCCCGGcGGCa -3' miRNA: 3'- -GCGuCGGg---CGGUUGCa--CG------GGGCC-CCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 10344 | 0.67 | 0.171988 |
Target: 5'- aGCGGCUCGaCucCGUGgCCUGGaGGCu -3' miRNA: 3'- gCGUCGGGCgGuuGCACgGGGCC-CCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 14726 | 0.67 | 0.167519 |
Target: 5'- cCGCAGCcguagccaCCGCCucuacCGaGgUCCGGGGCg -3' miRNA: 3'- -GCGUCG--------GGCGGuu---GCaCgGGGCCCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 29269 | 0.67 | 0.167519 |
Target: 5'- aGCGGCaUCGUCggUGUGCUuuGuGGGUu -3' miRNA: 3'- gCGUCG-GGCGGuuGCACGGggC-CCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 16286 | 0.67 | 0.163154 |
Target: 5'- aCGCAcuuuccGCCCgcGCCAcugcACGcGCCuCCGGGGg -3' miRNA: 3'- -GCGU------CGGG--CGGU----UGCaCGG-GGCCCCg -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 23550 | 0.68 | 0.158891 |
Target: 5'- uGCaAGCuCCuCCu-CGUGCUCCGcGGGCg -3' miRNA: 3'- gCG-UCG-GGcGGuuGCACGGGGC-CCCG- -5' |
|||||||
11883 | 3' | -64.7 | NC_003266.2 | + | 18014 | 0.68 | 0.15473 |
Target: 5'- cCGUGGCCCGC--GCGcGaCCgGGGGCu -3' miRNA: 3'- -GCGUCGGGCGguUGCaCgGGgCCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home