miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11891 5' -68.8 NC_003266.2 + 3711 0.69 0.075166
Target:  5'- gCGCCcaugGCCAUUCCgCGCaCGGCgcuGGCGGCa -3'
miRNA:   3'- -GCGG----CGGUGGGG-GUG-GCCG---CCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 4759 0.66 0.128035
Target:  5'- gGCCGUagauaACCCCaaugACCGGCuGCaGGUGg -3'
miRNA:   3'- gCGGCGg----UGGGGg---UGGCCGcCG-CCGC- -5'
11891 5' -68.8 NC_003266.2 + 4820 0.7 0.061175
Target:  5'- aGCCgGUCAUugggguuaucuacggCCCCACCGGCuGCGGUa -3'
miRNA:   3'- gCGG-CGGUG---------------GGGGUGGCCGcCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 6375 0.68 0.090485
Target:  5'- gGCgGCCGCCUCUGCUGGaccaacgagccccUGcGCGGCGa -3'
miRNA:   3'- gCGgCGGUGGGGGUGGCC-------------GC-CGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 8489 0.72 0.044801
Target:  5'- uGCCuccgggucccgaGCCGCCCCUACCGccCGGCGcGCGu -3'
miRNA:   3'- gCGG------------CGGUGGGGGUGGCc-GCCGC-CGC- -5'
11891 5' -68.8 NC_003266.2 + 8737 0.66 0.121488
Target:  5'- gGCCGgCGCgCUCCA-CGGUGGCcGCGa -3'
miRNA:   3'- gCGGCgGUG-GGGGUgGCCGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 9364 0.72 0.042291
Target:  5'- gCGCCGUCACCgagaCCaugcgacGCCGGCG-CGGCGa -3'
miRNA:   3'- -GCGGCGGUGGg---GG-------UGGCCGCcGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 10099 0.71 0.054263
Target:  5'- aGCgGCCAUCgCUCGgUGGCGGgGGCGc -3'
miRNA:   3'- gCGgCGGUGG-GGGUgGCCGCCgCCGC- -5'
11891 5' -68.8 NC_003266.2 + 10123 0.68 0.095709
Target:  5'- cCGCCGCCGCacuuCCUCAUCGGCuaccaguaccuGGUGcGCa -3'
miRNA:   3'- -GCGGCGGUG----GGGGUGGCCG-----------CCGC-CGc -5'
11891 5' -68.8 NC_003266.2 + 10160 0.71 0.054115
Target:  5'- aGCCGUagauguaccuugaCAUCCaggugaUGCCGGCGGCGGUGg -3'
miRNA:   3'- gCGGCG-------------GUGGGg-----GUGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 10164 0.66 0.128035
Target:  5'- cCGgCGCC-CCCgCCACCGaGCGaUGGCc -3'
miRNA:   3'- -GCgGCGGuGGG-GGUGGC-CGCcGCCGc -5'
11891 5' -68.8 NC_003266.2 + 10935 0.66 0.124722
Target:  5'- uGCC-CgGCCCCgCucaCGGCGGCcgcGGCGg -3'
miRNA:   3'- gCGGcGgUGGGG-Gug-GCCGCCG---CCGC- -5'
11891 5' -68.8 NC_003266.2 + 11139 0.67 0.11802
Target:  5'- gCGCCGCaGCUCCCGCCccgcguggaaacgGGCuGCGcGCa -3'
miRNA:   3'- -GCGGCGgUGGGGGUGG-------------CCGcCGC-CGc -5'
11891 5' -68.8 NC_003266.2 + 11769 0.67 0.106457
Target:  5'- gCGCCGCCugCuggcgCUUACCGcGCGGCGcauccugucguuGCGg -3'
miRNA:   3'- -GCGGCGGugG-----GGGUGGC-CGCCGC------------CGC- -5'
11891 5' -68.8 NC_003266.2 + 11905 0.74 0.027273
Target:  5'- cCGCCGCgGCUUCCAagacCCGGCGGCugGGCu -3'
miRNA:   3'- -GCGGCGgUGGGGGU----GGCCGCCG--CCGc -5'
11891 5' -68.8 NC_003266.2 + 11954 0.66 0.121488
Target:  5'- aGCaacaGCCACCUCCugauccccaauGCgGGCGGCGcuGCa -3'
miRNA:   3'- gCGg---CGGUGGGGG-----------UGgCCGCCGC--CGc -5'
11891 5' -68.8 NC_003266.2 + 13641 0.68 0.098034
Target:  5'- cCGCUGCCugUCgugCCAgCGGCguuuacgGGCGGCa -3'
miRNA:   3'- -GCGGCGGugGG---GGUgGCCG-------CCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 14736 0.66 0.138471
Target:  5'- aGCCaCCGCCUCUACCGaggucCGG-GGCGa -3'
miRNA:   3'- gCGGcGGUGGGGGUGGCc----GCCgCCGC- -5'
11891 5' -68.8 NC_003266.2 + 14840 0.67 0.100948
Target:  5'- aGCCuugGCCGCCgCCACU-GCuGCGGCGc -3'
miRNA:   3'- gCGG---CGGUGGgGGUGGcCGcCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 14959 0.67 0.106457
Target:  5'- aCGCUGCuCACCCCucggacguCACCuGCGGCGuggaGCa -3'
miRNA:   3'- -GCGGCG-GUGGGG--------GUGGcCGCCGC----CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.