miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11891 5' -68.8 NC_003266.2 + 30282 0.66 0.13143
Target:  5'- gCGCUccaagucuguGCCACCCUCGCUcuGGUGGCuaauGCGa -3'
miRNA:   3'- -GCGG----------CGGUGGGGGUGG--CCGCCGc---CGC- -5'
11891 5' -68.8 NC_003266.2 + 26706 0.66 0.124722
Target:  5'- aGCCGCUuuauACCCUgAgCGG-GGUGGUGa -3'
miRNA:   3'- gCGGCGG----UGGGGgUgGCCgCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 25788 0.67 0.109317
Target:  5'- -cCUGCCGCUCCUucuuACCGGUcugGGUGGUGg -3'
miRNA:   3'- gcGGCGGUGGGGG----UGGCCG---CCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 25677 0.72 0.04206
Target:  5'- uGCUGCUugCUuucuCCGCCgaggacgacggucuGGCGGCGGCGg -3'
miRNA:   3'- gCGGCGGugGG----GGUGG--------------CCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 25596 0.67 0.100948
Target:  5'- aGCCGCCGCCgCCagACCGuCGuccuCGGCGg -3'
miRNA:   3'- gCGGCGGUGGgGG--UGGCcGCc---GCCGC- -5'
11891 5' -68.8 NC_003266.2 + 23417 0.66 0.121488
Target:  5'- uGCUGCUGCUUCUugUcGGCGGUGGgGg -3'
miRNA:   3'- gCGGCGGUGGGGGugG-CCGCCGCCgC- -5'
11891 5' -68.8 NC_003266.2 + 23402 0.67 0.115252
Target:  5'- cCGCCGcCCAgCCCCGCCaccuuuGUcGCGGCc -3'
miRNA:   3'- -GCGGC-GGUgGGGGUGGc-----CGcCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 22992 0.66 0.137393
Target:  5'- gGCUucaGCUACCCCC-CCGuGCGGaucaccgagaaggaCGGCa -3'
miRNA:   3'- gCGG---CGGUGGGGGuGGC-CGCC--------------GCCGc -5'
11891 5' -68.8 NC_003266.2 + 18061 0.7 0.067457
Target:  5'- gCGCgGgCCACggCCACCGGCGGCaggGGCu -3'
miRNA:   3'- -GCGgC-GGUGggGGUGGCCGCCG---CCGc -5'
11891 5' -68.8 NC_003266.2 + 17988 0.68 0.083715
Target:  5'- aGUgGCUaaGCCCCUGCCGcCGGUGGCc -3'
miRNA:   3'- gCGgCGG--UGGGGGUGGCcGCCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 17708 0.7 0.065297
Target:  5'- aGCCGCCuggacccgguucCCCCCGCCGGCuccGUGGa- -3'
miRNA:   3'- gCGGCGGu-----------GGGGGUGGCCGc--CGCCgc -5'
11891 5' -68.8 NC_003266.2 + 17237 0.75 0.025098
Target:  5'- gGCgCGCCGCCgCCGgUGGgGGUGGCGg -3'
miRNA:   3'- gCG-GCGGUGGgGGUgGCCgCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 17172 1.06 0.000056
Target:  5'- gCGCCGCCACCCCCACCGGCGGCGGCGc -3'
miRNA:   3'- -GCGGCGGUGGGGGUGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 17049 0.66 0.121488
Target:  5'- gCGCgGCCGCggcgguaacucuCCgCACCagGGCGGCaGCGg -3'
miRNA:   3'- -GCGgCGGUG------------GGgGUGG--CCGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 16972 0.69 0.071019
Target:  5'- cCGCUGCCGCCCUggugcggagagugUACCGccGCGGCcGCGc -3'
miRNA:   3'- -GCGGCGGUGGGG-------------GUGGC--CGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 16081 0.68 0.085993
Target:  5'- gCGCCuGagaucuaCGgCCCCG-CGGCGGCGGUGa -3'
miRNA:   3'- -GCGG-Cg------GUgGGGGUgGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 16006 0.7 0.067457
Target:  5'- gCGCacggGCaCGCgCaCACCGGUGGCGGCGu -3'
miRNA:   3'- -GCGg---CG-GUGgGgGUGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 15925 0.7 0.060513
Target:  5'- gGCCGCUGCCgCCGCCG-UGGCcGCGc -3'
miRNA:   3'- gCGGCGGUGGgGGUGGCcGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 15771 0.71 0.052801
Target:  5'- uGCCGCCgggcgaugcGCCgCCGCCGGCucuuGGCgcgGGCGu -3'
miRNA:   3'- gCGGCGG---------UGGgGGUGGCCG----CCG---CCGC- -5'
11891 5' -68.8 NC_003266.2 + 15686 0.79 0.010297
Target:  5'- gCGCCGgUACgCCCgcgccaagaGCCGGCGGCGGCGc -3'
miRNA:   3'- -GCGGCgGUGgGGG---------UGGCCGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.