miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11891 5' -68.8 NC_003266.2 + 17172 1.06 0.000056
Target:  5'- gCGCCGCCACCCCCACCGGCGGCGGCGc -3'
miRNA:   3'- -GCGGCGGUGGGGGUGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 14736 0.66 0.138471
Target:  5'- aGCCaCCGCCUCUACCGaggucCGG-GGCGa -3'
miRNA:   3'- gCGGcGGUGGGGGUGGCc----GCCgCCGC- -5'
11891 5' -68.8 NC_003266.2 + 30282 0.66 0.13143
Target:  5'- gCGCUccaagucuguGCCACCCUCGCUcuGGUGGCuaauGCGa -3'
miRNA:   3'- -GCGG----------CGGUGGGGGUGG--CCGCCGc---CGC- -5'
11891 5' -68.8 NC_003266.2 + 4759 0.66 0.128035
Target:  5'- gGCCGUagauaACCCCaaugACCGGCuGCaGGUGg -3'
miRNA:   3'- gCGGCGg----UGGGGg---UGGCCGcCG-CCGC- -5'
11891 5' -68.8 NC_003266.2 + 8737 0.66 0.121488
Target:  5'- gGCCGgCGCgCUCCA-CGGUGGCcGCGa -3'
miRNA:   3'- gCGGCgGUG-GGGGUgGCCGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 11954 0.66 0.121488
Target:  5'- aGCaacaGCCACCUCCugauccccaauGCgGGCGGCGcuGCa -3'
miRNA:   3'- gCGg---CGGUGGGGG-----------UGgCCGCCGC--CGc -5'
11891 5' -68.8 NC_003266.2 + 23402 0.67 0.115252
Target:  5'- cCGCCGcCCAgCCCCGCCaccuuuGUcGCGGCc -3'
miRNA:   3'- -GCGGC-GGUgGGGGUGGc-----CGcCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 14959 0.67 0.106457
Target:  5'- aCGCUGCuCACCCCucggacguCACCuGCGGCGuggaGCa -3'
miRNA:   3'- -GCGGCG-GUGGGG--------GUGGcCGCCGC----CGc -5'
11891 5' -68.8 NC_003266.2 + 25596 0.67 0.100948
Target:  5'- aGCCGCCGCCgCCagACCGuCGuccuCGGCGg -3'
miRNA:   3'- gCGGCGGUGGgGG--UGGCcGCc---GCCGC- -5'
11891 5' -68.8 NC_003266.2 + 16081 0.68 0.085993
Target:  5'- gCGCCuGagaucuaCGgCCCCG-CGGCGGCGGUGa -3'
miRNA:   3'- -GCGG-Cg------GUgGGGGUgGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 15686 0.79 0.010297
Target:  5'- gCGCCGgUACgCCCgcgccaagaGCCGGCGGCGGCGc -3'
miRNA:   3'- -GCGGCgGUGgGGG---------UGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 10160 0.71 0.054115
Target:  5'- aGCCGUagauguaccuugaCAUCCaggugaUGCCGGCGGCGGUGg -3'
miRNA:   3'- gCGGCG-------------GUGGGg-----GUGGCCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 10099 0.71 0.054263
Target:  5'- aGCgGCCAUCgCUCGgUGGCGGgGGCGc -3'
miRNA:   3'- gCGgCGGUGG-GGGUgGCCGCCgCCGC- -5'
11891 5' -68.8 NC_003266.2 + 17708 0.7 0.065297
Target:  5'- aGCCGCCuggacccgguucCCCCCGCCGGCuccGUGGa- -3'
miRNA:   3'- gCGGCGGu-----------GGGGGUGGCCGc--CGCCgc -5'
11891 5' -68.8 NC_003266.2 + 16972 0.69 0.071019
Target:  5'- cCGCUGCCGCCCUggugcggagagugUACCGccGCGGCcGCGc -3'
miRNA:   3'- -GCGGCGGUGGGG-------------GUGGC--CGCCGcCGC- -5'
11891 5' -68.8 NC_003266.2 + 17988 0.68 0.083715
Target:  5'- aGUgGCUaaGCCCCUGCCGcCGGUGGCc -3'
miRNA:   3'- gCGgCGG--UGGGGGUGGCcGCCGCCGc -5'
11891 5' -68.8 NC_003266.2 + 22992 0.66 0.137393
Target:  5'- gGCUucaGCUACCCCC-CCGuGCGGaucaccgagaaggaCGGCa -3'
miRNA:   3'- gCGG---CGGUGGGGGuGGC-CGCC--------------GCCGc -5'
11891 5' -68.8 NC_003266.2 + 11905 0.74 0.027273
Target:  5'- cCGCCGCgGCUUCCAagacCCGGCGGCugGGCu -3'
miRNA:   3'- -GCGGCGgUGGGGGU----GGCCGCCG--CCGc -5'
11891 5' -68.8 NC_003266.2 + 25677 0.72 0.04206
Target:  5'- uGCUGCUugCUuucuCCGCCgaggacgacggucuGGCGGCGGCGg -3'
miRNA:   3'- gCGGCGGugGG----GGUGG--------------CCGCCGCCGC- -5'
11891 5' -68.8 NC_003266.2 + 9364 0.72 0.042291
Target:  5'- gCGCCGUCACCgagaCCaugcgacGCCGGCG-CGGCGa -3'
miRNA:   3'- -GCGGCGGUGGg---GG-------UGGCCGCcGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.