Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 15771 | 0.71 | 0.052801 |
Target: 5'- uGCCGCCgggcgaugcGCCgCCGCCGGCucuuGGCgcgGGCGu -3' miRNA: 3'- gCGGCGG---------UGGgGGUGGCCG----CCG---CCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 11139 | 0.67 | 0.11802 |
Target: 5'- gCGCCGCaGCUCCCGCCccgcguggaaacgGGCuGCGcGCa -3' miRNA: 3'- -GCGGCGgUGGGGGUGG-------------CCGcCGC-CGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 17049 | 0.66 | 0.121488 |
Target: 5'- gCGCgGCCGCggcgguaacucuCCgCACCagGGCGGCaGCGg -3' miRNA: 3'- -GCGgCGGUG------------GGgGUGG--CCGCCGcCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 22992 | 0.66 | 0.137393 |
Target: 5'- gGCUucaGCUACCCCC-CCGuGCGGaucaccgagaaggaCGGCa -3' miRNA: 3'- gCGG---CGGUGGGGGuGGC-CGCC--------------GCCGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 16006 | 0.7 | 0.067457 |
Target: 5'- gCGCacggGCaCGCgCaCACCGGUGGCGGCGu -3' miRNA: 3'- -GCGg---CG-GUGgGgGUGGCCGCCGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 17237 | 0.75 | 0.025098 |
Target: 5'- gGCgCGCCGCCgCCGgUGGgGGUGGCGg -3' miRNA: 3'- gCG-GCGGUGGgGGUgGCCgCCGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 11905 | 0.74 | 0.027273 |
Target: 5'- cCGCCGCgGCUUCCAagacCCGGCGGCugGGCu -3' miRNA: 3'- -GCGGCGgUGGGGGU----GGCCGCCG--CCGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 25677 | 0.72 | 0.04206 |
Target: 5'- uGCUGCUugCUuucuCCGCCgaggacgacggucuGGCGGCGGCGg -3' miRNA: 3'- gCGGCGGugGG----GGUGG--------------CCGCCGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 9364 | 0.72 | 0.042291 |
Target: 5'- gCGCCGUCACCgagaCCaugcgacGCCGGCG-CGGCGa -3' miRNA: 3'- -GCGGCGGUGGg---GG-------UGGCCGCcGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 25788 | 0.67 | 0.109317 |
Target: 5'- -cCUGCCGCUCCUucuuACCGGUcugGGUGGUGg -3' miRNA: 3'- gcGGCGGUGGGGG----UGGCCG---CCGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 13641 | 0.68 | 0.098034 |
Target: 5'- cCGCUGCCugUCgugCCAgCGGCguuuacgGGCGGCa -3' miRNA: 3'- -GCGGCGGugGG---GGUgGCCG-------CCGCCGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 10123 | 0.68 | 0.095709 |
Target: 5'- cCGCCGCCGCacuuCCUCAUCGGCuaccaguaccuGGUGcGCa -3' miRNA: 3'- -GCGGCGGUG----GGGGUGGCCG-----------CCGC-CGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 15925 | 0.7 | 0.060513 |
Target: 5'- gGCCGCUGCCgCCGCCG-UGGCcGCGc -3' miRNA: 3'- gCGGCGGUGGgGGUGGCcGCCGcCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 14840 | 0.67 | 0.100948 |
Target: 5'- aGCCuugGCCGCCgCCACU-GCuGCGGCGc -3' miRNA: 3'- gCGG---CGGUGGgGGUGGcCGcCGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 4820 | 0.7 | 0.061175 |
Target: 5'- aGCCgGUCAUugggguuaucuacggCCCCACCGGCuGCGGUa -3' miRNA: 3'- gCGG-CGGUG---------------GGGGUGGCCGcCGCCGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 6375 | 0.68 | 0.090485 |
Target: 5'- gGCgGCCGCCUCUGCUGGaccaacgagccccUGcGCGGCGa -3' miRNA: 3'- gCGgCGGUGGGGGUGGCC-------------GC-CGCCGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 11769 | 0.67 | 0.106457 |
Target: 5'- gCGCCGCCugCuggcgCUUACCGcGCGGCGcauccugucguuGCGg -3' miRNA: 3'- -GCGGCGGugG-----GGGUGGC-CGCCGC------------CGC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 23417 | 0.66 | 0.121488 |
Target: 5'- uGCUGCUGCUUCUugUcGGCGGUGGgGg -3' miRNA: 3'- gCGGCGGUGGGGGugG-CCGCCGCCgC- -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 18061 | 0.7 | 0.067457 |
Target: 5'- gCGCgGgCCACggCCACCGGCGGCaggGGCu -3' miRNA: 3'- -GCGgC-GGUGggGGUGGCCGCCG---CCGc -5' |
|||||||
11891 | 5' | -68.8 | NC_003266.2 | + | 3711 | 0.69 | 0.075166 |
Target: 5'- gCGCCcaugGCCAUUCCgCGCaCGGCgcuGGCGGCa -3' miRNA: 3'- -GCGG----CGGUGGGG-GUG-GCCG---CCGCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home