Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11894 | 3' | -53.9 | NC_003266.2 | + | 13358 | 0.67 | 0.611607 |
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Target: 5'- -gCC-UCGGgCACCGCUGCGgcagcacccGUGCGGc -3' miRNA: 3'- agGGaAGUUgGUGGUGGCGU---------UACGCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 24850 | 0.67 | 0.634427 |
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Target: 5'- aUCCUgcCGGCCACCugcuCCGCGcUGCc- -3' miRNA: 3'- -AGGGaaGUUGGUGGu---GGCGUuACGcc -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 17244 | 0.66 | 0.645839 |
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Target: 5'- cCCCaUC-AUCGCCGCgGCGAU-CGGg -3' miRNA: 3'- aGGGaAGuUGGUGGUGgCGUUAcGCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 17338 | 0.66 | 0.645839 |
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Target: 5'- -gCCUgc-ACCGCCACggaaGCAAUGcCGGg -3' miRNA: 3'- agGGAaguUGGUGGUGg---CGUUAC-GCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 8502 | 0.66 | 0.657238 |
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Target: 5'- cCCCU---GCCACCACUGCcuc-CGGg -3' miRNA: 3'- aGGGAaguUGGUGGUGGCGuuacGCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 15819 | 0.66 | 0.668612 |
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Target: 5'- gCCCUgcgCAGCaaggcucgCGCCGCaCGCAugGCGGu -3' miRNA: 3'- aGGGAa--GUUG--------GUGGUG-GCGUuaCGCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 9274 | 0.66 | 0.668612 |
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Target: 5'- cCCCUcccCcGCCACCACCGCc-UGaGGa -3' miRNA: 3'- aGGGAa--GuUGGUGGUGGCGuuACgCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 15935 | 0.66 | 0.691237 |
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Target: 5'- gCgCgac-GCCGCCACCGguGUGCGc -3' miRNA: 3'- aGgGaaguUGGUGGUGGCguUACGCc -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 22991 | 0.66 | 0.691237 |
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Target: 5'- --gCUUCAGCUACCcCC-CcGUGCGGa -3' miRNA: 3'- aggGAAGUUGGUGGuGGcGuUACGCC- -5' |
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| 11894 | 3' | -53.9 | NC_003266.2 | + | 16969 | 0.66 | 0.702464 |
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Target: 5'- cUCCC----GCUGCCGCCcUggUGCGGa -3' miRNA: 3'- -AGGGaaguUGGUGGUGGcGuuACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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