miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11900 3' -56.6 NC_003266.2 + 16516 0.66 0.533455
Target:  5'- -cGUCGGGGcuugaAGC-GCGAGGGCg -3'
miRNA:   3'- acUAGCUCCugcagUCGuCGCUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 23960 0.66 0.522637
Target:  5'- aGAucuUCGAGGGucUgGGCAGCGAcgagacucGGGCc -3'
miRNA:   3'- aCU---AGCUCCUgcAgUCGUCGCU--------CCCG- -5'
11900 3' -56.6 NC_003266.2 + 16903 0.66 0.522637
Target:  5'- aUGAUgGaAGGAUG-CAGC-GCGuaguuGGGCa -3'
miRNA:   3'- -ACUAgC-UCCUGCaGUCGuCGCu----CCCG- -5'
11900 3' -56.6 NC_003266.2 + 23458 0.66 0.522637
Target:  5'- aGGUgGcGGGGC-UgGGCGGCG-GGGCg -3'
miRNA:   3'- aCUAgC-UCCUGcAgUCGUCGCuCCCG- -5'
11900 3' -56.6 NC_003266.2 + 33409 0.66 0.522637
Target:  5'- cUGGUaCGGcGGGCG-CAGCAGCGGauGCg -3'
miRNA:   3'- -ACUA-GCU-CCUGCaGUCGUCGCUccCG- -5'
11900 3' -56.6 NC_003266.2 + 5409 0.66 0.501265
Target:  5'- gGAcUCGGGGGCGUaGGCGuccGCGccgcaguGGGCg -3'
miRNA:   3'- aCU-AGCUCCUGCAgUCGU---CGCu------CCCG- -5'
11900 3' -56.6 NC_003266.2 + 5373 0.66 0.490723
Target:  5'- gGAcUUGAGGGCGUagAGCu-UGGGGGCg -3'
miRNA:   3'- aCU-AGCUCCUGCAg-UCGucGCUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 9232 0.66 0.490723
Target:  5'- gGGagGGGGccuGCGUCgccGGCGGCGcacGGGCa -3'
miRNA:   3'- aCUagCUCC---UGCAG---UCGUCGCu--CCCG- -5'
11900 3' -56.6 NC_003266.2 + 5095 0.66 0.490723
Target:  5'- aGA-CGAuGGGCGUCcagcGCGGCcAGGGUc -3'
miRNA:   3'- aCUaGCU-CCUGCAGu---CGUCGcUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 6861 0.67 0.480285
Target:  5'- gUGA-CGAGGACGUCcagggcGCAGUagucaAGGGUc -3'
miRNA:   3'- -ACUaGCUCCUGCAGu-----CGUCGc----UCCCG- -5'
11900 3' -56.6 NC_003266.2 + 25659 0.67 0.469957
Target:  5'- ---cCGAGGACGaCGGUcuGGCGGcGGCg -3'
miRNA:   3'- acuaGCUCCUGCaGUCG--UCGCUcCCG- -5'
11900 3' -56.6 NC_003266.2 + 7097 0.67 0.469957
Target:  5'- uUGcgCaGGGAgGUguGC-GUGAGGGCg -3'
miRNA:   3'- -ACuaGcUCCUgCAguCGuCGCUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 23054 0.67 0.459744
Target:  5'- ---cUGcAGGACGUCAGCcaggacAGCGAGGa- -3'
miRNA:   3'- acuaGC-UCCUGCAGUCG------UCGCUCCcg -5'
11900 3' -56.6 NC_003266.2 + 30073 0.67 0.449649
Target:  5'- gUGAUCGGGGugGUCAuccUAGCGAu-GCu -3'
miRNA:   3'- -ACUAGCUCCugCAGUc--GUCGCUccCG- -5'
11900 3' -56.6 NC_003266.2 + 16217 0.68 0.429834
Target:  5'- ----gGAGGcGCGUgCAGUGGCGcGGGCg -3'
miRNA:   3'- acuagCUCC-UGCA-GUCGUCGCuCCCG- -5'
11900 3' -56.6 NC_003266.2 + 21838 0.68 0.420121
Target:  5'- uUGAacUCGGGGAUcagcaguuUCGGCAGC-AGGGUg -3'
miRNA:   3'- -ACU--AGCUCCUGc-------AGUCGUCGcUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 10093 0.68 0.410542
Target:  5'- cGGUaGAGcGGCcaucgcUCGGUGGCGGGGGCg -3'
miRNA:   3'- aCUAgCUC-CUGc-----AGUCGUCGCUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 8406 0.68 0.401099
Target:  5'- cGG-CGAGGACGcgCgccgGGCGGUaGGGGCg -3'
miRNA:   3'- aCUaGCUCCUGCa-G----UCGUCGcUCCCG- -5'
11900 3' -56.6 NC_003266.2 + 26533 0.68 0.382635
Target:  5'- gUGAUUGcGGGGCGU-GGCGGUGAGcGCu -3'
miRNA:   3'- -ACUAGC-UCCUGCAgUCGUCGCUCcCG- -5'
11900 3' -56.6 NC_003266.2 + 7477 0.69 0.35602
Target:  5'- cUGcUCGAGGGCccaGUCGGCgAGaUGGGGGUu -3'
miRNA:   3'- -ACuAGCUCCUG---CAGUCG-UC-GCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.